Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4461 ATGTGGTTGCAGAAAAATTATGAGGATGTTCATCTCCAATTCGCATGCCATGCTGCTACAACATGGAAAATTGATAAAGAGAAAGAGCCATTAAGCATTAATATTGCAACATTTTAGAGGTAATTAAGAAAGCTTAAATTCTCACAGTTGATTGAAGCAACCAATGGCTTCTCAGCAGCAAGCCTCATTGGTTGTGGTGGTTTTGGTGAAGTGTTTAAGGCCACACTCAAAGACGGGACATGTGTCGCGATAAAGAAGCTCATTCGACTGAGTTGCCAAGGTGATAGAGAATTCATGGCTGAGATGGAAACCTTAGAAAAAATCAAGCATAAAAACCTTGTCCCTTTATTGGGATACTGCAAAGTAGGAGAAGAGAGGCTACTTGTTTATGAATACATGAAATATGAAAGCCTAGAAGAGATGCTCCACAGAAGAATAAAGACATGTAAACGACGAATTTTAACATGGGAAGAAAGGAAGAAGATTGCAAGAGGTTTTGCTAAAGGACTTTGTTTTCTGCATCATAATTGCATCCCTCACATCATACACAAAGACATGAAGTCAAGCAATGTATTACTTGACAATGAAATGGAGTCAAGAGTCTTGGATTTCAGAATGGCAAGACTAATAAGTGCACTTGATACACATCTCAGTGTAAGCACACTAGTAGGAACACCTGGATATGTTCCACCAGAGTATTACCAAAGTTTCAGGTGCACTGCAAAGGGTGATGTTTATTCATTTGGTGTTGTAATGTTGGAACTTCTTAATGGGAAAAGGCCTGGTGATAAGGAGGATTTTGGTGACACAAACTTGGTTGGATGGGCTAAGATTAAGGTGCGCGAAGGGAAACAAATGGAAGTAATTAACGCTGATTTGCTTTTGGAGATTCAAGGAGGAACAAATGAAGCAGAACTGAAAGAAGTAATTGGCACTTATAGGCAACTCATTTGA 954 0.3899 MWLQKNYEDVHLQFACHAATTWKIDKEKEPLSINIATF*R*LRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGTCVAIKKLIRLSCQGDREFMAEMETLEKIKHKNLVPLLGYCKVGEERLLVYEYMKYESLEEMLHRRIKTCKRRILTWEERKKIARGFAKGLCFLHHNCIPHIIHKDMKSSNVLLDNEMESRVLDFRMARLISALDTHLSVSTLVGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLNGKRPGDKEDFGDTNLVGWAKIKVREGKQMEVINADLLLEIQGGTNEAELKEVIGTYRQLI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4461 315 Gene3D Transferase(Phosphotransferase) domain 1 131 314 - -
Mtr3g4461 315 SMART serkin_6 55 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4461 315 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Mtr3g4461 315 Pfam Protein kinase domain 58 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4461 315 Gene3D Phosphorylase Kinase; domain 1 16 130 - -
Mtr3g4461 315 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Mtr3g4461 315 SUPERFAMILY Protein kinase-like (PK-like) 31 277 IPR011009 -
Mtr3g4461 315 ProSiteProfiles Protein kinase domain profile. 55 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4461 315 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 12 314 - -
Mtr3g4461 315 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4461 Mtr-Chr3 58613655 58614608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4461 13 297 Receptor kinase-like Gene Family AT1G55610 66.319 4.76e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Mtr3g4461 Pkinase 4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4461 - - mtr:MTR_3g117910 542.347