Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4456 ATGGGAAGGTCCCCTTGCTGTGAGAAAGGTCACATAAACAAAGGAGCATGGAGCAAAGAAGAAGGAGCGGCTGCTCACGGTGAGGGATGCTGGCGCTCTCTCCCAAAAGCCGCTGGTCTTCTCCGTTGCGGTAAGAGTTGCCGTCTCCGGTGGATCAACTACCTACGCCCCGACCTCAAACGTGGAAATTTCACCCAACAAGAAGATCAACTCATCATAAAACTCCACACTCTCCTCGGTAACAAGTGGTCTATGATAGCCGGAAGATTGGCCGGAAGAACAGATAATGAGATAAAAAATTATTGGAATACACATTTAAGAAAGAAGCTTTTGAGCAGAGGAATTGACCCAGCAACTCACATGCCTCTCGACCAACCTAATTCTTCTGCTTCTGCCACCACAGCTCAAGTGGAAAGCTGCCCTAATTTGAATCTTGAACTAACCATTAGTCCTCCACATGATCACCCTCACCACCCATTCATTTGTAGCACAAGCACTGCTACTGCTTAA 510 0.4745 MGRSPCCEKGHINKGAWSKEEGAAAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQQEDQLIIKLHTLLGNKWSMIAGRLAGRTDNEIKNYWNTHLRKKLLSRGIDPATHMPLDQPNSSASATTAQVESCPNLNLELTISPPHDHPHHPFICSTSTATA* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4456 169 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 132 - -
Mtr3g4456 169 SMART sant 13 57 IPR001005 -
Mtr3g4456 169 SMART sant 60 108 IPR001005 -
Mtr3g4456 169 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Mtr3g4456 169 ProSiteProfiles Myb-like domain profile. 9 55 IPR001005 -
Mtr3g4456 169 CDD SANT 16 55 IPR001005 -
Mtr3g4456 169 Gene3D - 16 60 - -
Mtr3g4456 169 CDD SANT 63 106 IPR001005 -
Mtr3g4456 169 SUPERFAMILY Homeodomain-like 12 102 IPR009057 -
Mtr3g4456 169 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 132 - -
Mtr3g4456 169 Gene3D - 62 137 - -
Mtr3g4456 169 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 55 IPR017930 -
Mtr3g4456 169 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Mtr3g4456 169 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4456 Mtr-Chr3 58582506 58586415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4456 1 158 MYB Transcription Factor Family AT4G38620 66.265 2.81e-79 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g4456 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4456 K09422 - gmx:778031 263.462