Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4454 ATGGAAAGGTTAGGGTGGTGTTTGGAATTCGTTCTTGGAGAATCAAGTATAGATAGTGAGTGTATTAAGGAACTGATTAAAGTAAACTACTCAGTTACCGAAATCAATAATAGGAACATGAGAATGATTATGCTGAAGTTCCTTGAAGATGAGTTGTTGTCGAAAGCATCTATAGATGAATGGATGCTTGAACTTCTCGAGGTATTAGAAAAACTACTTCTAATTGATTGCAATGACCCTTCAAACCCTAACCCTATTAGCCATGCCATGAAATCTGCTTATTTCTACATTGCTGTGGAATGTACAGTTAAGTACCTTGAAGCAGGTGGTACATCTAACTACCTCCAAGCAGCAGTTGACAGAATATGGAACCGTAGGTTTCAAAAATTGGAGGAGGGAAGTTATTTGTTAACTCCAAAATGGAGACTCTGGAAAACGCTTATCAATGATTCCCTTGTTGATTCACAAACCATGCTCAGACTTGCTTCATTGTCTAATACCAGAAAGAAAGCCATTAAAGAGGTTCAACGCTTTTTGGTGGATGCTCGGAATAACCTTGTTGGCCCTTCCTTTCTCCACTCTGTTGCTGCTCCTGCTCAAAATCAATCCCATAATGAGTCTCCCATGGAAGTCGACAAAGATAATGGAAGGCTTAAAGGCAAGGCTTCTACTACTATTGTTGTTGTTGAGGAAATGGCTACATCAACCAGCTTTAGCAAAATTGACCCTTTGCCTGTTAACGAGGCCCCAAAGAATAAATGCAATTCTGTGGAGTTCGAAACATTTGCAAACGATCCTGTGCCCGATTCAATTTGTATGACAGACATTGTAAGGTCTGATGTGGCAATTGAAGAAACGAACCAGGAGCCACAAATGGAAAACCAGAGTAAAGATGCAAATGTACCCAACCCACAAACTTGCCTAAATATTAACAATGATGAGGCAAATCTTACGAAGGCAACTTCCCATCATCCTAGCTTGATGAACCCAAATAGTTCTGCTCGTACTCATGAGTGGGATGATTCGATCGATGGATTGCAGGCAGGAACATCAAGGGGCACAAGTAGAATTCGTTTGCGCAGTCCAGAGACGAAGAAGCTTTCTCCATTGAAGGAGTATGAACCAAAAAAAATTACGAAAAGGAGAAAGAAAAAAAAATGGAGTCAATGGGAAGAGGATAATCTAAGGACCGGAATTAAACTAATTGGAGAAGGAAACTGGAAATCAATTCTTCGTTCTTATGCATTTGACGAAAGAACTGAAGTTGATTTAAAAGATAAGTGGAGAAATTTGAAGCGGTATGAAAGCCAATGA 1314 0.3973 MERLGWCLEFVLGESSIDSECIKELIKVNYSVTEINNRNMRMIMLKFLEDELLSKASIDEWMLELLEVLEKLLLIDCNDPSNPNPISHAMKSAYFYIAVECTVKYLEAGGTSNYLQAAVDRIWNRRFQKLEEGSYLLTPKWRLWKTLINDSLVDSQTMLRLASLSNTRKKAIKEVQRFLVDARNNLVGPSFLHSVAAPAQNQSHNESPMEVDKDNGRLKGKASTTIVVVEEMATSTSFSKIDPLPVNEAPKNKCNSVEFETFANDPVPDSICMTDIVRSDVAIEETNQEPQMENQSKDANVPNPQTCLNINNDEANLTKATSHHPSLMNPNSSARTHEWDDSIDGLQAGTSRGTSRIRLRSPETKKLSPLKEYEPKKITKRRKKKKWSQWEEDNLRTGIKLIGEGNWKSILRSYAFDERTEVDLKDKWRNLKRYESQ* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4454 437 ProSiteProfiles Myb-like domain profile. 379 432 IPR001005 -
Mtr3g4454 437 PANTHER MYB TRANSCRIPTION FACTOR 5 435 - -
Mtr3g4454 437 PANTHER MYB TRANSCRIPTION FACTOR 5 435 - -
Mtr3g4454 437 CDD SANT_TRF 387 433 - -
Mtr3g4454 437 Gene3D - 376 435 - -
Mtr3g4454 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 379 436 IPR017930 -
Mtr3g4454 437 SMART sant 383 434 IPR001005 -
Mtr3g4454 437 MobiDBLite consensus disorder prediction 343 363 - -
Mtr3g4454 437 SUPERFAMILY Homeodomain-like 381 432 IPR009057 -
Mtr3g4454 437 Pfam Myb-like DNA-binding domain 384 432 IPR001005 -
Mtr3g4454 437 MobiDBLite consensus disorder prediction 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4454 Mtr-Chr3 58571426 58574000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4454 86 431 Single Myb Histone (SMH) Gene Family AT1G15720 28.090 3.19e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g4454 Myb_DNA-binding 7.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4454 - K11111 mtr:MTR_3g116690 836.254