Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4452 ATGTCTAACCCCAACCCTAATCCCAACCCCAACCCCAAAGTTTTCTTTGACATGACCGTCGGAGACGAACCGGTCGGTCGTATCGTCATGGAACTTTATGCCGACACCACTCCTCTTACCGCCGATAACTTCCGTGCACTCTGTACCGGGGAGAAAGGACTCGGTAGCAGCGGCAAGCCTCTCCATTACAAAGGCTCTACCTTCCACCGTGTCATACCTGATTTCATGTGTCAAGGAGGTGACTTCACCGCCGGTAATGGTACAGGTGGAGAGTCCATCTACGGGTCCAAATTCGCCGACGAGAATTTCATCAAAACCCACACAGGTCCAGGTGTTCTTTCGATGGCAAATGCAGGACCCGGTACGAATGGATCGCAGTTCTTTATATGCACGGCAAAGACGGAGTGGCTTGACGGGAAGCATGTGGTTTTTGGTGAGGTGGTTGAAGGAATGGAGGTGGTGAAAGAGATTGAGAAAGTTGGTTCCGGTTCGGGAAAAACATCAAAGCCAGTGGTTATTGCTGACTGCGGCCAACTCTCTGATGATAATCATCTTAATAACCAACAACATATATAG 576 0.4965 MSNPNPNPNPNPKVFFDMTVGDEPVGRIVMELYADTTPLTADNFRALCTGEKGLGSSGKPLHYKGSTFHRVIPDFMCQGGDFTAGNGTGGESIYGSKFADENFIKTHTGPGVLSMANAGPGTNGSQFFICTAKTEWLDGKHVVFGEVVEGMEVVKEIEKVGSGSGKTSKPVVIADCGQLSDDNHLNNQQHI* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4452 191 Gene3D - 2 187 IPR029000 -
Mtr3g4452 191 CDD cyclophilin_ABH_like 13 177 - -
Mtr3g4452 191 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 178 IPR002130 GO:0000413|GO:0003755
Mtr3g4452 191 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 177 IPR002130 GO:0000413|GO:0003755
Mtr3g4452 191 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 32 47 IPR002130 GO:0000413|GO:0003755
Mtr3g4452 191 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 68 80 IPR002130 GO:0000413|GO:0003755
Mtr3g4452 191 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 126 IPR002130 GO:0000413|GO:0003755
Mtr3g4452 191 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 138 IPR002130 GO:0000413|GO:0003755
Mtr3g4452 191 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 154 IPR002130 GO:0000413|GO:0003755
Mtr3g4452 191 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 180 - -
Mtr3g4452 191 SUPERFAMILY Cyclophilin-like 7 182 IPR029000 -
Mtr3g4452 191 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 63 80 IPR020892 GO:0003755|GO:0006457
Mtr3g4452 191 PIRSF Peptidylpro_ismrse 3 184 IPR024936 GO:0003755
Mtr3g4452 191 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4452 Mtr-Chr3 58554871 58555657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4452 7 160 U-box Gene Family AT5G67530 45.161 6.45e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4452 K01802 - cit:102623101 300.441