Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4448 ATGATGCTAACTGTTCACCGTGTATATCTTTCTGCTGTACTTAAGTTGATTTTGTTAATTACTACTCTCTGCACTTTATCAGATTGCTATGACCCTTTGGATCCAAATGGGAACATTTCTGTAACATTTGACATTTACCAACGTATGGAAAATGGATATCTGGCAAGGGTGACTCTTGAAAACCATCATCAATATCGGCATGTAGACAAACCAGGGTGGAAACTAGGATGGACATGGGCTAATAAGGAGGTGATATGGTCAATGAGTGGTGCAATTGCAACTGATAGGGGTGATTGCTCATCTTATAGTGGTTCTCAGATGCCACATTCATGCAAAAAAGATCCAATCATAGTTGATATATCTCCAGATGTGTCACAAAACAGGTCAGACCATTGCTGTCGTGGTGGCCGCCTCTCTGCCCGAGCTGTTGATTCTTTCAATTCATTGTCTTCATTTGAACTTGAAGTAAGAAACTTGGAGGAAAAAGAAAATTCACTTGGACAAGCTCCTAATAATGTTACATTCATGGCCCCAGGTCCTGGTTACACTTGTAGCTCATTTCTGACTTCTGATCCCTCAGTGTCCTTAGATTTTGGTGGACAGAGACAAGTTCCAGTTCTCAGAACTTGGAAGTCAACATGTACGTACTCAAGTTTCTTAGCAAACAAGTCACCAGTATGCTGTGTTTCGTTCTCAACATTTTACAATCCTATCATCACACCATGCCGTAATTGCACTTGTGGTGGATGCAGGGAAGCAAATAAAAATTCACTGTCTTGCATAAGGCCAGGTGATCCTCTGGGAGGGTCAAATGATGAGAAAAATATAATTGAATGTACTGACCACATGTGTCCAATTCGAGTCCATTGGCATTTCAAGAACAATTATATGAATCAATGGAGGATCAAGCTTACAATTTCTAACTACAACTTCAATAGAAACTACTCTAACTGGAACGTGCTCGTTCAACATCCTGGTTTTAACCAAAAGGCAACAACTTACAGCTTCAATAGCACTAAACTTTCGACTCTTGGGATCCAAGATGGAGTAGCTCTTTTCTGGGGGATAGATTACTACAACAATGAATTATTGCATTCTGATAAGGACCGAGTTGGTTCTGTGACAACAGAGATACTATTGGAAAAAGATGAGAATTCCTTCACATTGCAAAACGGATGGACATTTCCAAGAAGAATATATTTCAACGGTGAAAACTGTGACATGCCTTTACCTGACACATTCCCTATGTTACCAAATGGTAGCTCCAGTTTAAGACCAACTTCCCATGTTTTTACTCTTTCATTAATTTATTTGTTGCTTGTCCAATTAGTACTGCTGTAG 1341 0.396 MMLTVHRVYLSAVLKLILLITTLCTLSDCYDPLDPNGNISVTFDIYQRMENGYLARVTLENHHQYRHVDKPGWKLGWTWANKEVIWSMSGAIATDRGDCSSYSGSQMPHSCKKDPIIVDISPDVSQNRSDHCCRGGRLSARAVDSFNSLSSFELEVRNLEEKENSLGQAPNNVTFMAPGPGYTCSSFLTSDPSVSLDFGGQRQVPVLRTWKSTCTYSSFLANKSPVCCVSFSTFYNPIITPCRNCTCGGCREANKNSLSCIRPGDPLGGSNDEKNIIECTDHMCPIRVHWHFKNNYMNQWRIKLTISNYNFNRNYSNWNVLVQHPGFNQKATTYSFNSTKLSTLGIQDGVALFWGIDYYNNELLHSDKDRVGSVTTEILLEKDENSFTLQNGWTFPRRIYFNGENCDMPLPDTFPMLPNGSSSLRPTSHVFTLSLIYLLLVQLVLL* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4448 446 Pfam COBRA-like protein 53 217 IPR006918 GO:0010215|GO:0031225
Mtr3g4448 446 PIRSF COBRA 1 446 IPR006918 GO:0010215|GO:0031225
Mtr3g4448 446 PANTHER PROTEIN COBRA 2 440 IPR006918 GO:0010215|GO:0031225
Mtr3g4448 446 Coils Coil 149 169 - -
Mtr3g4448 446 PANTHER COBRA-LIKE PROTEIN 2 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4448 Mtr-Chr3 58518118 58520724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4448 28 445 COBRA Gene Family AT3G29810 45.626 1.17e-134 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4448 - - ccaj:109801855 698.353