Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4444 ATGGCCATTAGATCAAAATCAAGCAAGCTTGCTCAGAACACAGTGCTTAAGCAAATCCTAAGGAGATGTTCAAGCTTAGGTAAGAAAAATGAGTATGATCAAGATGAAGATGATCATGGTCTTCCTCTTGATGTCCCAAAAGGTCATTTTGCTGTTTATGTTGGTGAAAACAGAAGCAGATATATTGTACCAATCTCATTCTTAACTCACCCTCAATTTCAGTCACTCCTTCGACAAGCTGAAGAAGAATTTGGCTTTGATCACGACATGGGACTCACCATTCCTTGTCAAGAAGTTGTTTTTCGATCCCTAACTTCGATTATGCTCAGATCATGA 336 0.3899 MAIRSKSSKLAQNTVLKQILRRCSSLGKKNEYDQDEDDHGLPLDVPKGHFAVYVGENRSRYIVPISFLTHPQFQSLLRQAEEEFGFDHDMGLTIPCQEVVFRSLTSIMLRS* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4444 111 Pfam Auxin responsive protein 19 107 IPR003676 GO:0009733
Mtr3g4444 111 PANTHER SMALL AUXIN-UP RNA-RELATED 7 110 - -
Mtr3g4444 111 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 110 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4444 Mtr-Chr3 58488512 58496248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4444 42 104 Calmodulin-binding Proteins AT3G43120 55.556 3.55e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4444 K14488 - csin:114293599 179.489