Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4442 ATGGAGGGTGGCGAGGATGATTCTCGGCAAGGAAGTACGTTAGTGATTCATCAAACCACCGAACAACTGATCGCCAGATGCATAGCTCCTGTTAAGAAGGACTTCCTTCGTCCTCCTCCCGATCGAACAACTACTTCCTCTGCTCCAAACGACAAACCCCCCGTTCTCGCCAAGGAGAAGAAATCTAAACGCCAACTCAAACGTGAACGTCTTCAGGATAAAAAATCAACAAAAAACCTTTGTCCAAACCTTGCCAAGTCCGGTGATGTTAATTCCTGTCCTTATCAAGTAAACTGTCGTTTCAGCCATGATATTCAAGCATTCAAGGAACAGAAATTGGCTGATTTGGAGGGTGAATGCCCTTTTTTGAAATCTGAAGGGGCTTGCCCTTATGGGTTATCGTGTAGATTTTTAAATACACATCAAGAGGGTAAGCCTTTATCTTCTAATGGATTGAAGGTAAGGTGTGAAGTTAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTATGGAAAAATAAGATGACTTTCCCCAAAACTGATGCCAAACTCAAAAGTCTTGGTCTCTTGAATAAGTCAAAAGGGAATGCCGTCAAAAACAAAGATGGTGGTGATAAATGTGTTCAGTCTGATGACAATGGTTCTTGTGCGGTTACATCTGAGTTGGAAAACAAAGACGATGGTGACAAACACCATCAGTCTGATGATGACGGCTCTTGTGAGGTTCCTGCTGACTCAGATTCTAAGTTAGAACGCTTTGTAGAAGTTATAAAAGATGATGATGGCATTAAAAGAGAACTTGAACCTGATATACCTTGTCCCCAAAAGAAAAGAAAAACCGCAGAAAATTGTGAAGATGAGGAGACGGAAAATGAAGTTGTGAGTGTCGATGACCAAATTGTGGACGGATGCTGCATAAGATCTGAACCAGAGGCAGGAACTGAAGTTATAACCCCAGAAACTGATCTAAGCTTGAAGTCACACTCACGTGAAAAGAAGCTTATTGATTTCAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATATAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGGAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTATTTGGTGTACAAATCTGCGGGGCACATCCAGATACTGTAGGGCGAGCTGTTGAACTAATAGAAAAGGAATGTACAGTAGATTTCATTGATATAAACATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCGGGATCAGCTCTTCTTACAAAACCAATGCGCATGCAAAATGTTGTAGAAGTAGCTTCAGGCACAGTCGATATTCCAGTAACTATAAAGGTACGGACAGCGTATTTTGAAGGGAGGAATCGTATCGACTCTCTGATAGCAAATTTTAGCTCTTGGGGAGCTAGTGCAGTGACAATACATGGCAGGTCACGGCAACAACGCTATAGCAAGCCTGCTGACTGGGATTACGTATATCAGTGTACCAGGAAAGCTCCTAATAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGTAGACTGGAACAACCACAAAACTGAATGCCCTGAACTTGCCACATGCTTGATTGCCCGTGGCGCACTTATTAAACCCTGGATATTTACAGAGATAAAGGAACAGCGACATTGGGACATCAGTTCTGGCGAGCGATTAAATATTTTCAAAGATTTTGTGCATTTTGGTCTTCAACATTGGGGTTCAGATACAAAAGGGGTGGAGACTACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTGTAGGTACATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGAATAAATTGGCGTCCACCATCTTACCACGGGCGGGATGACCTTGAGACACTGATGGCCTCTGACTCTGCAGCTGACTGGGTGCGATTATCAGAGATGTTACTTGGGAAAGTTCCAGATGGCTTTACTTTTGCACCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA 2076 0.4253 MEGGEDDSRQGSTLVIHQTTEQLIARCIAPVKKDFLRPPPDRTTTSSAPNDKPPVLAKEKKSKRQLKRERLQDKKSTKNLCPNLAKSGDVNSCPYQVNCRFSHDIQAFKEQKLADLEGECPFLKSEGACPYGLSCRFLNTHQEGKPLSSNGLKVRCEVNGFSKDVQKLLWKNKMTFPKTDAKLKSLGLLNKSKGNAVKNKDGGDKCVQSDDNGSCAVTSELENKDDGDKHHQSDDDGSCEVPADSDSKLERFVEVIKDDDGIKRELEPDIPCPQKKRKTAENCEDEETENEVVSVDDQIVDGCCIRSEPEAGTEVITPETDLSLKSHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADITCGEMAMCTNLLEGQASEWALLRRHSSEDLFGVQICGAHPDTVGRAVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMQNVVEVASGTVDIPVTIKVRTAYFEGRNRIDSLIANFSSWGASAVTIHGRSRQQRYSKPADWDYVYQCTRKAPNNLQVVGNGDVFSFVDWNNHKTECPELATCLIARGALIKPWIFTEIKEQRHWDISSGERLNIFKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRINWRPPSYHGRDDLETLMASDSAADWVRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4442 691 Gene3D - 71 150 - -
Mtr3g4442 691 Gene3D Aldolase class I 334 577 IPR013785 -
Mtr3g4442 691 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 29 691 - -
Mtr3g4442 691 MobiDBLite consensus disorder prediction 264 284 - -
Mtr3g4442 691 Pfam Dihydrouridine synthase (Dus) 342 576 IPR035587 -
Mtr3g4442 691 MobiDBLite consensus disorder prediction 218 244 - -
Mtr3g4442 691 MobiDBLite consensus disorder prediction 221 244 - -
Mtr3g4442 691 SUPERFAMILY FMN-linked oxidoreductases 339 652 - -
Mtr3g4442 691 ProSitePatterns Uncharacterized protein family UPF0034 signature. 423 441 IPR018517 GO:0008033|GO:0017150|GO:0050660
Mtr3g4442 691 ProSiteProfiles Zinc finger C3H1-type profile. 75 106 IPR000571 GO:0046872
Mtr3g4442 691 MobiDBLite consensus disorder prediction 264 290 - -
Mtr3g4442 691 MobiDBLite consensus disorder prediction 34 80 - -
Mtr3g4442 691 ProSiteProfiles Zinc finger C3H1-type profile. 119 144 IPR000571 GO:0046872
Mtr3g4442 691 CDD DUS_like_FMN 339 574 IPR035587 -
Mtr3g4442 691 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 29 691 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr3g4442 Dus 8.2e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4442 K05544 - gmx:100783494 1026.16