Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4438 ATGAATGCCGCCGAAGAAGAGGAAGCTCCACCTCACCAACAACCCTCCGATTCCCCACCTCCTCCTCCTCCTCCGTCGAACCTCTCAGTTAATGCCGACGCCGATATGCACGACGCCGTCGTTATTGGATGTGAGAACAATGATTCCGCCGTAAACAGCACCGATGAGGTTGCTGTTGATGACGCGGCGTTGGCTGAGGGCGGTGAAGGCCAATTGCATGTGATGGAAACTGCTTCCTACGGTGATGGGGATGGTATGCAAGACGATGAAGAAATTGCTGCAGAGGAGAAGGGGACTGATGTTGATTTAGAGCCCGATAATGTCGAAGAGGTTCAAGTTAGGGTTGATAACTCAGATGAAGCTCCTTTGATCGGAGAAGACGACGAGGAGAAGAAGGAAGAAGAAGACGAGAAAGAAATTCAAGAAGGTGAACATCCGCAGCAAAATGAAGACGATGAAGAACAAGAGCAGGAGCAAGAAGATGACGAAGAAGAAGCTGATCCTGATGGTGATGGTGATGTTAGTTTACCAGATGTAGAAGATAAAGAGGCTGATGAGGAGACGGTGGTGGAGGTAGCGGAGGAGGAGCCAAGTCCAAGTGCGAGTGCTGGGAAAAGGAAGAGTGGGAATGGGAAGAATTCTAAATCGAGTGGGAGAGTTCCTTCAAAGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTTGATGGGGGTGACCTTGTGCTTTGTGACCGAAGGGGTTGCCCCAAGGCTTACCACCCTTCTTGCGTTAATCGCGACGAGGCCTTCTTCCAAACCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCACACTACTTGTGCTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGTTATGTTATGTGTTAGGGGAAACAAGGGGTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGGAGGGAAACAACATGGCACAGGTTGACTTTAATGACAAAAATAGTTGGGAGTACCTTTTCAAGGATTACTATGTAGATCTAAAAGGAAAGCTATCTCTAACATTTGATGAACTCGCTCAAGCCAAAAACCCTTGGAAGGGTTCTGGTAAGCTTCCTTCTAAAGAGGAATCACCAGATGAACTTTTTGATGCCACAAATGATAGAGGATCAGATTCAGATAGCCCTTATGAGAATGTAGATTTGAGTCGATCTAAAAAAAGAAAGCCCAAGAAACGGGCAAAGTCTCGTTCCAAAGAAGGGAAATCATATAGTGCGTCATCTACAGAAGAAAGCTCTGAGTGGGCTTCAAAGGAGCTTTTGGAGTTTGTGATGCACATGAGAAATGGAGATAAATCTATGTTGCCGCAGTTTGATGTGCATGCTCTTTTGCTAGAATATATTAAAATAAATAAACTTCGAGATCCTCGCCGAAAAAGTCAAATCGTTTGTGATGCGAGGCTTCAAAATTTGTTTGGTAAGCCAAGAGTTGGACATTTTGAAATGTTAAAACTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCACAAGCTGAAGATCACCAGGGGAGTGTTGTCGATACTGAAGTTAGTCATCTGGAAGGTGATGGCGATGATGATACATATATTAAAGTTGGAAAGGATAAGAAACGTAAAAGTCGTAAAAAGGGTGATGAGAGAGGACTTCAATCAAATATTGATGAATATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAACTTAGTGGAAGATCTACTTGAAGATACAGATCAGTTTCATGACAGCGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAAAAGCAAGACTTGTATAGGCTGGTGCAGGTTGCAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGCCTCCGCCAAAGCATAAAATGCGGCCTCATTAATCGGATGACCGTGGGTGACATTCAGGACAAAGCATTGACACTTCAGGCAGTTAGAGTAAAGGATTGGCTAGAAACAGAGATAGTGCGGCTAAGCCACCTTCGTGATAGAGCTAGTGAGAATGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTCTGAAAACCCCTGAAGAACGGCAACGTAGATTGGAGGAAATTCCAGAAATACATGTGGATCCAAAAATGGATCCAAGTTATGAGTCTGACGAAGGAGATGAAATGGAGGATAAAAGACAAGAAAACTTCATGAGACCTAGAGGGTCGAGTGCGTTTGGAAGGAAGGGGAGAGAAATTGCTTCGCCTAGAAGTGGTTCCATTTCAAGTGATTCTTGGAGTGGAACAAGGAACTATTCTCCCATGAATCAGGAACTCAGCAGAAACTTGTCTAATAAGGGATTTTCAGTCAAAGGTGATGATGTTTCTAATGCCACTGAGCTTTTAAATGATTCTCAATTTCACCAGGGAAGAGATAAGGAATCACAACTATCTAATAGTTGGGATAGGCAAAAGCTACTGTCTTCAAGCTTGGAGAATGGTGGTAAAAGTACCCGGCCATTGGTAGCATCCGAGTCTTTCTCAAATACTGTATCAGAAGCTGCCACAGCACCATCTTCTGGCGGATTAGCAGCTCCGGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAACTTAGCAAATGGAATAATACGGGATACTTCCCTGCTGATTTGAGGATTTGGAAAACCAGTGAGAGACAAGATGAATCTATACTCTTAAGAGATGTCTTAGCAGGGAAATTTTCTATAGAACCATCCGCGGTGGATACAACTCCTCCTAAGGCTCAAAATCACTCATCCTCATTCTCCAGGATGTCTCCTTTGGCGGCTCAAGGTTTAGCAAGTAAAACATCTCCTTTGGCAGTTGAGGTCCCTAAAAACCCTGGAAATGGTTGGGGTTCTGGTGCCAGTGTAAAAAATGAACCAACAAGTCTCCCTTCGCCTACTCCCCAAACTGCTTCAGTTGGGTCCATGGGGCATGCTTTTGAAAACAAATGGTCACCAACACCTGTCCAGATGGCTGGGTCTGTTTTGGGAAATTCGTTCCCAAACAGTCTCGGAGGTTTTCAGACCTCTGTGGCAGTCAACTCACACCCTGGTATAACTGCAGATACTACTCAAGTGCATCTTCAAGCAACAGCTGCAAATATGCAAAACCAGGCTGCGAGTATCCATAATTCTCGTGCTGAAGCTCAAGGGTGGGGTCAGTCTGTGGTTCCAAAGCCAGAATCACAGGCCTGGGGAGGTACACCATCTCAAAGAGTAGAGGTGAATAATTCTGGAACCTTGCCTGCCCAGCAAGCTTCCCATGGTCTATGGGGTGATGCTTCTTCTGTTCAGAACTCTGCCTCATTTAGCACTGGAAATCCAACTGGGAGTTTACCCGCACATGGATTTCCAGGCATGACTGCACCAGGTAATCAAGCAAACACCATGGTCCCACCACCACCCAATATGTCATGGGGCATGAACATGCCTGGAAATCAGAATACTAGCTTGGGTGGGGCTATACCTACCAAGATGAATGTTAACTGGACGCATGCACAAGCGCCAGCACCTGGAAATGCAACTCCAGGATGGGCAGCTCCTACCCAGGGGCTACCTCAGGTAAATGCAAATGCAGGCAGCTGGGTAGCACCTGGTCAAGGTCATCCACATGTAAATAATGCTAGTGCAGGTTGGGCTGTGCCTGGTCAAGGGCCAGCACCTGGAAATGCCAATCCTTCTTGGGCTGCATCTGCTGGGAACCCAGGCATGTGGGGAAACGGGCAGAGTCATAGCGGAGAGAGGTTTCACAACCAAGGGGATCGTGGTACCCGTGGTGGAGATTCTGGTCGTGGAGGTAAATCTTGGAACCGGCAGTCATCATTTAGAAGCGGAAGCAGAGGGGGTTCTAGGCCTCCTAGTGGGGGGCAAAGAGGAATCTGCAGGTATTATGAGAGTGGAAATTGCAGGAAAGGAGCTTCCTGCGATTATCAACACAACTAA 4200 0.4505 MNAAEEEEAPPHQQPSDSPPPPPPPSNLSVNADADMHDAVVIGCENNDSAVNSTDEVAVDDAALAEGGEGQLHVMETASYGDGDGMQDDEEIAAEEKGTDVDLEPDNVEEVQVRVDNSDEAPLIGEDDEEKKEEEDEKEIQEGEHPQQNEDDEEQEQEQEDDEEEADPDGDGDVSLPDVEDKEADEETVVEVAEEEPSPSASAGKRKSGNGKNSKSSGRVPSKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFQTKGKWNCGWHLCSNCEKNAHYLCYTCTFSLCKGCIKDAVMLCVRGNKGFCETCMRTVMLIEQNEEGNNMAQVDFNDKNSWEYLFKDYYVDLKGKLSLTFDELAQAKNPWKGSGKLPSKEESPDELFDATNDRGSDSDSPYENVDLSRSKKRKPKKRAKSRSKEGKSYSASSTEESSEWASKELLEFVMHMRNGDKSMLPQFDVHALLLEYIKINKLRDPRRKSQIVCDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDHQGSVVDTEVSHLEGDGDDDTYIKVGKDKKRKSRKKGDERGLQSNIDEYAAIDNHNINLIYLRRNLVEDLLEDTDQFHDSVVGSFVRIRISGSGQKQDLYRLVQVAGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQDKALTLQAVRVKDWLETEIVRLSHLRDRASENGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSSAFGRKGREIASPRSGSISSDSWSGTRNYSPMNQELSRNLSNKGFSVKGDDVSNATELLNDSQFHQGRDKESQLSNSWDRQKLLSSSLENGGKSTRPLVASESFSNTVSEAATAPSSGGLAAPAVKINETEKMWHYQDPSGKVQGPFSMVQLSKWNNTGYFPADLRIWKTSERQDESILLRDVLAGKFSIEPSAVDTTPPKAQNHSSSFSRMSPLAAQGLASKTSPLAVEVPKNPGNGWGSGASVKNEPTSLPSPTPQTASVGSMGHAFENKWSPTPVQMAGSVLGNSFPNSLGGFQTSVAVNSHPGITADTTQVHLQATAANMQNQAASIHNSRAEAQGWGQSVVPKPESQAWGGTPSQRVEVNNSGTLPAQQASHGLWGDASSVQNSASFSTGNPTGSLPAHGFPGMTAPGNQANTMVPPPPNMSWGMNMPGNQNTSLGGAIPTKMNVNWTHAQAPAPGNATPGWAAPTQGLPQVNANAGSWVAPGQGHPHVNNASAGWAVPGQGPAPGNANPSWAASAGNPGMWGNGQSHSGERFHNQGDRGTRGGDSGRGGKSWNRQSSFRSGSRGGSRPPSGGQRGICRYYESGNCRKGASCDYQHN* 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4438 1399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 322 IPR013083 -
Mtr3g4438 1399 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 71 1399 - -
Mtr3g4438 1399 SMART PHD_3 230 276 IPR001965 -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 529 555 - -
Mtr3g4438 1399 Coils Coil 124 144 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 1186 1209 - -
Mtr3g4438 1399 SUPERFAMILY SWIB/MDM2 domain 440 519 IPR036885 -
Mtr3g4438 1399 SUPERFAMILY CCCH zinc finger 1377 1399 IPR036855 GO:0046872
Mtr3g4438 1399 SUPERFAMILY FYVE/PHD zinc finger 218 275 IPR011011 -
Mtr3g4438 1399 ProSitePatterns Zinc finger PHD-type signature. 231 291 IPR019786 -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 1 35 - -
Mtr3g4438 1399 PANTHER UNCHARACTERIZED 71 1399 - -
Mtr3g4438 1399 CDD SWIB-MDM2_like 446 518 - -
Mtr3g4438 1399 SMART gyf_5 929 984 IPR003169 GO:0005515
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 203 217 - -
Mtr3g4438 1399 Gene3D SWIB/MDM2 domain 430 528 IPR036885 -
Mtr3g4438 1399 Gene3D - 581 709 IPR036128 GO:0003677
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 754 792 - -
Mtr3g4438 1399 SMART rtf1 579 689 IPR004343 GO:0003677
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 529 568 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 1025 1061 - -
Mtr3g4438 1399 ProSiteProfiles Zinc finger C3H1-type profile. 1374 1399 IPR000571 GO:0046872
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 1037 1061 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 1286 1378 - -
Mtr3g4438 1399 ProSiteProfiles SWIB/MDM2 domain profile. 437 520 IPR003121 -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 83 106 - -
Mtr3g4438 1399 SUPERFAMILY Plus3-like 580 708 IPR036128 GO:0003677
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 122 137 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 13 28 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 810 833 - -
Mtr3g4438 1399 CDD Bbox1 276 302 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 1352 1370 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 1136 1157 - -
Mtr3g4438 1399 Pfam SWIB/MDM2 domain 445 518 IPR003121 -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 381 396 - -
Mtr3g4438 1399 SMART swib_2 452 523 IPR019835 -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 373 437 - -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 754 833 - -
Mtr3g4438 1399 ProSiteProfiles Plus3 domain profile. 579 712 IPR004343 GO:0003677
Mtr3g4438 1399 ProSiteProfiles GYF domain profile. 928 982 IPR003169 GO:0005515
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 146 193 - -
Mtr3g4438 1399 CDD GYF 928 983 IPR003169 GO:0005515
Mtr3g4438 1399 Pfam GYF domain 931 972 IPR003169 GO:0005515
Mtr3g4438 1399 SUPERFAMILY GYF domain 919 981 IPR035445 -
Mtr3g4438 1399 Gene3D - 929 987 IPR035445 -
Mtr3g4438 1399 CDD PHD5_NSD 230 275 - -
Mtr3g4438 1399 ProSiteProfiles Zinc finger PHD-type profile. 228 294 IPR019787 -
Mtr3g4438 1399 MobiDBLite consensus disorder prediction 77 221 - -
Mtr3g4438 1399 Pfam Plus-3 domain 584 687 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4438 Mtr-Chr3 58405306 58416016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4438 228 308 PHD Transcription Factor Family AT4G14920 37.037 5.48e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mtr3g4438 Plus-3 6.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4438 - - mtr:MTR_3g117490 2553.09