Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4431 ATGGAGTTTGCAGTAGCAAAAGCTTTGAAACCGAGTTTAAGAAGCGAGTTTGTTTTTCAACAAACTCTCGGCGAGGAACTTTTTAGCTTCACTGCCAACACGGTGGTTGCCGGTGAAGATTTCTCCGTTGACGACCTCCTTGACTTCTCTCACGGCGGTGATATTCTTCACCACGACGGAGATGAACAAGAGAAAGAGAGTAGTTTATCTCCTTCTTCTCAATCACTCTCAGAAGATAACAACTCAAATTCCACCGGCGCTTCCTTTGATTCTTCCATTTTCTCAACCGAATTACTCGTTCCCGATGATGACGTGGCAGGCCTGGAATGGGTTTCACATTTCGTAGATGATTCTCTCCCAGAACTATCTCTTCTCTACCCGGTTCAAATTCAAACCAACGCGTGTCCTAAACAACATGAAACTCAGCATGGAAAAACTTTACGTTTTTCAACTGAAAAAATGAAAATTACCACCAAGACCAGAACCGTGAAGAATAGAAAACCCAACCCTCGCGTTTGGGCTCAGCGCCCGTTTTTTCCGTCGCCGTCTGTTGTTTTTGGTGCACCACCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCTCAAGTTGTTGGGCATGAGGCCCAAGAAGAGGGCCAGTTACAACGACGGTGTAGTCATTGCCAGGTGCAGAAGACGCCGCAGTGGAGAACCGGTCCGATGGGTGCTAAAACCCTTTGTAACGCGTGTGGGGTTCGATATAAATCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACTTTCAGCAGTGAAATTCATTCCAATAGCCACCGTAAAGTGTTGGAGATGAGGAAGAGGAAAGGAATGGTTGGACCGGAACCCGGTTTACCGACTCAGACCCAAATGGTTACCACTTGCTGA 906 0.4724 MEFAVAKALKPSLRSEFVFQQTLGEELFSFTANTVVAGEDFSVDDLLDFSHGGDILHHDGDEQEKESSLSPSSQSLSEDNNSNSTGASFDSSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNACPKQHETQHGKTLRFSTEKMKITTKTRTVKNRKPNPRVWAQRPFFPSPSVVFGAPPAKKQKKKPEAQVVGHEAQEEGQLQRRCSHCQVQKTPQWRTGPMGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPTQTQMVTTC* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4431 301 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Mtr3g4431 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 273 - -
Mtr3g4431 301 PIRSF Txn_fac_GATA_plant 20 300 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mtr3g4431 301 PANTHER GATA TRANSCRIPTION FACTOR 1 301 - -
Mtr3g4431 301 MobiDBLite consensus disorder prediction 54 87 - -
Mtr3g4431 301 MobiDBLite consensus disorder prediction 67 87 - -
Mtr3g4431 301 Gene3D - 207 283 IPR013088 GO:0006355|GO:0008270
Mtr3g4431 301 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Mtr3g4431 301 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Mtr3g4431 301 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Mtr3g4431 301 PANTHER GATA TRANSCRIPTION FACTOR 1 301 - -
Mtr3g4431 301 ProSiteProfiles GATA-type zinc finger domain profile. 215 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4431 Mtr-Chr3 58332624 58334149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4431 40 282 C2C2-Gata Transcription Factor Family AT4G36240 43.874 2.76e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr3g4431 GATA 1.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4431 - - gmx:100780311 336.65