Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4427 ATGAAGATCCAATGTGATGTGTGTGAGAAAGCTGAGGCTACTATGTTCTGTCCTTCAGATGAAGCTGCTCTTTGCCATGGATGTGATCATACCATCCACCGTGCCAACAAGCTCGCAACCAAACACACTCGTTTTTCTCTTGTTCACCTCAACTCCAAAGACTACCCTCTTTGTGATATCTGTCAAGAGAGGCGTGGATATCTATTTTGCCAAGAAGATAGAGCGATTCTATGCAGAGAATGTGACCTTCCAATCCATGGAGCAAATCAACATACACAGAAACATAACAGGTTTCTTCTCTCTGGTGTTAAGCTTTCAAGCAATTCTTTAGACCCAGATTCATCATCCACCAGTATTGTCTCTGAAGCAAGAAACTACTCTAGTAGATCAAAAGCAAACATAATACCAACATCAGTTTCCAATGAAAATGCAAGTTCTTCTTGCATGGTTGAAGACAACATGGCTAGTGATACTGGTTCTGTTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACAATACCTGGTTACTGTTTTGAAGACCTTCTTGATGCTTCTTTCCCACCTAATGGTTTCTGTAAGAAGCAGAAGCAGAATCATTATTCAGCATTTCAGTACCAAGATATTCATGTTAACAAGTTTTTTTTTTCCTCAAGTAACGTGTGTACCTCTAGCTCAGGCTGA 684 0.3991 MKIQCDVCEKAEATMFCPSDEAALCHGCDHTIHRANKLATKHTRFSLVHLNSKDYPLCDICQERRGYLFCQEDRAILCRECDLPIHGANQHTQKHNRFLLSGVKLSSNSLDPDSSSTSIVSEARNYSSRSKANIIPTSVSNENASSSCMVEDNMASDTGSVSTSSISEYLIETIPGYCFEDLLDASFPPNGFCKKQKQNHYSAFQYQDIHVNKFFFSSSNVCTSSSG* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4427 227 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr3g4427 227 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Mtr3g4427 227 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Mtr3g4427 227 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 201 - -
Mtr3g4427 227 CDD Bbox1_BBX-like 57 100 - -
Mtr3g4427 227 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 201 - -
Mtr3g4427 227 CDD Bbox1_BBX-like 5 47 - -
Mtr3g4427 227 Gene3D Classic Zinc Finger 1 100 - -
Mtr3g4427 227 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mtr3g4427 227 SMART bboxneu5 53 100 IPR000315 GO:0008270
Mtr3g4427 227 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4427 Mtr-Chr3 58283074 58284598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4427 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 50.000 1.10e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mtr3g4427 zf-B_box 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4427 - - mtr:MTR_3g117320 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g0668 1 7519615 7521536 Mtr3g4427 3 58283074 58284598 PCT