Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4424 ATGGCTAAACCAAAAGCCCCAAAGCGAAACCTAGAGTCATACTCAGTCAAACATATGAACAAATCTGTCACAATCAAAGCTGGGGATTGTGTGCTTATGCGTCCTTCTGATCCATCCAAACCCTCATACGTTGCAAAGATCGAAGGGATCGAAGCTGATTCACGAGGTGCTAACGTTAAAGTTAACGTCCGGTGGTATTACCGGCCGGAGGAGTCAATCGGTGGCCGGAGACAGTTTCACGGCTCAAAAGAGCTTTTTCTGTCAGATCATTTTGATGTTCAGAGTGCTGATACAATTGAAGGAAAGTGTGTTGTTCATGGTTTCAAGAGCTACACTAAGCTTGATGCTGTTGGTAATGATGATTTCTTCTGTCGATTTGAGTACAATTCTGCTACTGGTGCTTTCAATCCTGATAGAGTTGCAGTGTATTGTAAATGTGAGATGCCCTACAACCCTGATGATCTGATGGTTCAGTGTGAGGGCTGCAGTGACTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCGAAAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTGTTGAAGGTCAAAAACAGCTGCAAAATTCTCATTCTGCTACAAGACTCGCAGATACAAAGGTGGATACTAAACGCCGCCGAAGGTAG 657 0.4414 MAKPKAPKRNLESYSVKHMNKSVTIKAGDCVLMRPSDPSKPSYVAKIEGIEADSRGANVKVNVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCVVHGFKSYTKLDAVGNDDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFFCESCSVEGQKQLQNSHSATRLADTKVDTKRRRR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4424 218 ProSitePatterns Zinc finger PHD-type signature. 144 189 IPR019786 -
Mtr3g4424 218 PANTHER OS08G0421900 PROTEIN 1 218 - -
Mtr3g4424 218 SMART PHD_3 143 190 IPR001965 -
Mtr3g4424 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 205 IPR013083 -
Mtr3g4424 218 ProSiteProfiles Zinc finger PHD-type profile. 141 192 IPR019787 -
Mtr3g4424 218 SMART BAH_4 23 139 IPR001025 GO:0003682
Mtr3g4424 218 ProSiteProfiles BAH domain profile. 23 139 IPR001025 GO:0003682
Mtr3g4424 218 PANTHER CHROMATIN REMODELING PROTEIN SHL 1 218 IPR045205 GO:0006325|GO:0035064
Mtr3g4424 218 Pfam PHD-finger 143 191 IPR019787 -
Mtr3g4424 218 Gene3D - 2 137 IPR043151 -
Mtr3g4424 218 SUPERFAMILY FYVE/PHD zinc finger 133 195 IPR011011 -
Mtr3g4424 218 Pfam BAH domain 23 138 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4424 Mtr-Chr3 58255751 58260029 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4424 43 141 Core DNA Replication Machinery Family AT4G14700 30.303 1.00e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr3g4424 BAH 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4424 - - gmx:100787968 416.387