Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4403 ATGTTGCACTGTTTGAATACTACTACTAATTCTGGGAATCTAGCAACTGAGAGTTGCTCCTCTGACATAACAGTGTTGGAAAGACAAAGGGAAAGAATGAAGTGGCAGCAACAACAACATCATCAAGGTTACTTCAACTCTGCTGCTATGTTCTGTTCTTCTCTGCAACAACAAGTTGACAATTCTGAAGCCTCTTCACTTGCTGCTGATTTACTGCCTCTTCAAATGCCAACTCTTGATGTTACTTCTTCTTCTATTTCAAGAACTTTCAGTTGTCCACCTCTTCTTCCAGATCCCAAACTCATTCACTCTTCAATTGCTGGGAAAGACAAAGACAATTCTTCTAAGAAAAGAAAAGCTGAAAAATCTCATCATAATTCTAAGCTCAAGGTTGTTGTTGGTGAAATTGAAATTGAGAATAAAGACAAGAGGATCAAAATAGGTTCTGAGGACGGAGAATCAAAGATCACCGGGAATCCGAATACCAAGAAGAACTGTGTAGCAGAAGATACTTCAAACTCAAAGGAAAATTCAAAAGTTTCTGATGTTCAAAAGACTGATTACATTCATGTTCGAGCACGTCGTGGCCAAGCCACCGACAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAGATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAAAAACAAGTTGAGTTCTTGTCAATGAAATTAGCTACTGTGAATCCAAGGCTTGATTTCAATATTGATGATCTATTTGAAAAAGAGGTTTTTCCTAATTGTGATGCAAATGCATCTTTTCAAGCTATGGGAATGTCAACAGGATTGAATAGTAACAATCCTTATCTTCAGTTCAATTCACCACAGCAATTTGTTCCATATGGTGGATTAGATGCTGGAATGAACCCTTCAGATATGGGACTTAGAAGGAGCATAAGTGCCCCTGTATCCATTCCTCAAACTTTTATTGATTCTTCTTGTTTCTCTCAGCAAATTCTACCGTCTACAATATGGGAAGGTGATTTCCAAAACCTATACAACTTCAATTTTGATCAAGCAAGAGCAACATCTTTTCCTACTCAATCTCAGTTATTTACAGGTCTTGTTGAAGCAAACAATCTAAAGATCGAGATGTAG 1197 0.3734 MLHCLNTTTNSGNLATESCSSDITVLERQRERMKWQQQQHHQGYFNSAAMFCSSLQQQVDNSEASSLAADLLPLQMPTLDVTSSSISRTFSCPPLLPDPKLIHSSIAGKDKDNSSKKRKAEKSHHNSKLKVVVGEIEIENKDKRIKIGSEDGESKITGNPNTKKNCVAEDTSNSKENSKVSDVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPRLDFNIDDLFEKEVFPNCDANASFQAMGMSTGLNSNNPYLQFNSPQQFVPYGGLDAGMNPSDMGLRRSISAPVSIPQTFIDSSCFSQQILPSTIWEGDFQNLYNFNFDQARATSFPTQSQLFTGLVEANNLKIEM* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4403 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 247 IPR011598 GO:0046983
Mtr3g4403 398 Pfam Helix-loop-helix DNA-binding domain 201 248 IPR011598 GO:0046983
Mtr3g4403 398 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 82 377 - -
Mtr3g4403 398 MobiDBLite consensus disorder prediction 104 119 - -
Mtr3g4403 398 SMART finulus 203 253 IPR011598 GO:0046983
Mtr3g4403 398 MobiDBLite consensus disorder prediction 101 128 - -
Mtr3g4403 398 MobiDBLite consensus disorder prediction 154 179 - -
Mtr3g4403 398 MobiDBLite consensus disorder prediction 149 182 - -
Mtr3g4403 398 Gene3D - 194 267 IPR036638 GO:0046983
Mtr3g4403 398 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 82 377 IPR024097 GO:0006355
Mtr3g4403 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 266 IPR036638 GO:0046983
Mtr3g4403 398 CDD bHLH_AtBPE_like 187 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4403 Mtr-Chr3 58017271 58020947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4403 22 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 40.108 4.47e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g4403 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4403 - - gmx:100798855 432.565