Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4402 ATGGCCTCAAGTTCCCTTAGCAAACACAAGCCTTGTGATTCAATTTGGACTCCAAAACAAAACAAGTTGTTTGAAAAAGCACTTGCAAAATTTGATAAGGATACCCCTGACCGTTGGCAAAATGTAGCAAAAGCCGTTGGTGGTAAATCAGTTGAGGAAGTTAAGAGACATTATGAGCTACTCTTGGAGGATCTCAAACACATTGAGTCTGGTCATGTTCCTATTCCAAACTACAAATCCACGTGA 246 0.4024 MASSSLSKHKPCDSIWTPKQNKLFEKALAKFDKDTPDRWQNVAKAVGGKSVEEVKRHYELLLEDLKHIESGHVPIPNYKST* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4402 81 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Mtr3g4402 81 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Mtr3g4402 81 Pfam Myb-like DNA-binding domain 16 59 IPR001005 -
Mtr3g4402 81 PANTHER PROTEIN RADIALIS-LIKE 3 1 80 - -
Mtr3g4402 81 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Mtr3g4402 81 CDD SANT 16 62 IPR001005 -
Mtr3g4402 81 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 80 IPR044636 GO:0003700
Mtr3g4402 81 Gene3D - 12 75 - -
Mtr3g4402 81 SMART sant 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4402 Mtr-Chr3 57992590 57993459 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g4402 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4402 - - gmx:100785292 149.828