Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4400 ATGGAAAGGTTAGGGTGGTGTTTGGAATTCGTTCTTGGAGAATCAAGTATAGATAGTGAGTGTATTAAGGAACTGATTAAAGTAAACTACTCAGTTACCGAAATCAATAATAGGAACATGAGAATGATTATGCTGAAGTTCCTTGAAGATGAGTTGTTGTCGAAAGCATCTATAGATGAATGGATGCTTGAACTTCTCGAGGTATTAGAAAAACTACTTCTAATTGATTGCAATGACCCTTCAAACCCTAACCCTATTAGCCATGCCATGAAATCTGCTTATTTCTACATTGCTGTGGAATGTACAGTTAAGTACCTTGAAGCAGGTGGTACATCTAACTACCTCCAAGCAGCAGTTGACAGAATATGGAACCGTAGGTTTCAAAAATTGGAGGAGGGAAGTTATTTGTTAACTCCAAAATGGAGACTCTGGAAAACGCTTATCAATGATTCCCTTGTTGATTCACAAACCATGCTCAGACTTGCTTCATTGTCTAATACCAGAAAGAAAGCCATTAAAGAGGTTCAACGCTTTTTGGTGGATGCTCGGAATAACCTTGTTGGCCCTTCCTTTCTCCACTCTGTTGCTGCTCCTGCTCAAAATCAATCCCATAATGAGTCTCCCATGGAAGTCGACAAAGATAATGGAAGGCTTAAAGGCAAGGCTTCTACTACTGTTGTTGTTGTTGAGGAAATGGCTACATCAACCAGCTGTAGCAAAATTGACTCTTTGCCTGTTAACGAGGCCCCAAAGAATAAATGCAATTCTGTGGAGTTCGAAACATTTGCAAACGATCCTGTGCCCGATTCAATTTGTATGACGGACATTGTAAGGTCTGATGTGGCAATTGAAGAAACGAACCAGGAGCCACAAATGGAAAACCAGAGTAAAGATGCAAATGTACCCAACCCACAAACTTGCCTAAATATTAACAATGATGAGGCAAATCTTACGAAGGCAACTTCCCATCATCCTAGCTTGATGAACCCAAATAGTTCTGCTCGTACTCATGAGTGGGATGATTCGATCGATGGATTGCAGGCAGGAACAGTAAGGGGCACAAGTAGAATTCGTTTGCGCAGTCCAGAGACGAAGAAGCTTTCTCCATTGAAGGAGTATGAACCAAAAAAAATTACGAAAAGGAGAAAGAAAAAAAAATGGAGTCAATGGGAAGTGGATAATCTAAAGACCGGAATTGAAGTAATTGGAGAAGGAAACTGGAAATCAATTCTTCGTTCTTATGATTTTGACGAAAGAACTGAAGTTGATTTGAAAGACAAGTGGAGAAATATGAAGCGGTCTGGATGCCAATGA 1314 0.4011 MERLGWCLEFVLGESSIDSECIKELIKVNYSVTEINNRNMRMIMLKFLEDELLSKASIDEWMLELLEVLEKLLLIDCNDPSNPNPISHAMKSAYFYIAVECTVKYLEAGGTSNYLQAAVDRIWNRRFQKLEEGSYLLTPKWRLWKTLINDSLVDSQTMLRLASLSNTRKKAIKEVQRFLVDARNNLVGPSFLHSVAAPAQNQSHNESPMEVDKDNGRLKGKASTTVVVVEEMATSTSCSKIDSLPVNEAPKNKCNSVEFETFANDPVPDSICMTDIVRSDVAIEETNQEPQMENQSKDANVPNPQTCLNINNDEANLTKATSHHPSLMNPNSSARTHEWDDSIDGLQAGTVRGTSRIRLRSPETKKLSPLKEYEPKKITKRRKKKKWSQWEVDNLKTGIEVIGEGNWKSILRSYDFDERTEVDLKDKWRNMKRSGCQ* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4400 437 MobiDBLite consensus disorder prediction 197 218 - -
Mtr3g4400 437 CDD SANT_TRF 387 433 - -
Mtr3g4400 437 SUPERFAMILY Homeodomain-like 386 433 IPR009057 -
Mtr3g4400 437 Pfam Myb-like DNA-binding domain 384 432 IPR001005 -
Mtr3g4400 437 PANTHER MYB TRANSCRIPTION FACTOR 5 434 - -
Mtr3g4400 437 ProSiteProfiles Myb-like domain profile. 379 432 IPR001005 -
Mtr3g4400 437 PANTHER MYB TRANSCRIPTION FACTOR 5 434 - -
Mtr3g4400 437 Gene3D - 376 436 - -
Mtr3g4400 437 SMART sant 383 434 IPR001005 -
Mtr3g4400 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 379 436 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4400 Mtr-Chr3 57973944 57976585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4400 55 431 Single Myb Histone (SMH) Gene Family AT1G15720 28.312 7.31e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g4400 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4400 - K11111 mtr:MTR_3g116690 864.759