Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4398 ATGGCACCTTCCGCCAATTCCTCCGGCGGTTCTGTGCCGTTGCTAACCACCTCTATCGTAGGGCTGAAATTCTATATCTTAGTCCTCATTTTAGTCGCAATCGTAGTCACAATCATTCTCATCACCGTTCTCTGCATTCGCCGGAATCGAACCTCAAAGAAGAGCAAAATGCGGCGAGTGAAGCATAGTTCCGGAACAATTCCACTTGTTTCTAAGGAGATCGTGGAGGTGATCAAGATCGAACAAGTTGACGGTGATGAATCGTCGAGGATGAAGAAGCAAGTGGAGTGTGAGATCGAAGAGAGTAGTAGTGTGTCGGTGGAGTCACCGTCGCCGTCGGCGAACATAGGGTGGGGTCGGTGGTATAGTTTGAAGGAATTGGAGAATGCGACGGATGGATTTGCGGAAGGGAGCGTGATCGGAGAAGGAGGATATGGAATTGTATACAGAGGAATTCTTCAAGATGGTTCTATTGTCGCTGTCAAGAATCTTCTCAACAATAAGGGTCAAGCAGAGAAAGAGTTTAAAGTGGAAGTTGAAGCCATTGGAAAAGTGAGGCATAAGAATTTGGTTGGGTTAGTTGGATATTGTGCAGAAGGTGCTAAAAGGATGCTTGTTTACGAATATGTTGACAATGGAAATTTAGAGCAGTGGCTGCATGGTGATGTAGGACCTGTTAGCCCTTTGACTTGGGATATACGAATGAAGATTGCTGTTGGGACTGCAAAAGGGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTTGTCCACCGAGATGTAAAATCAAGCAACATTCTTTTAGACAAAAAATGGCATGCCAAAGTATCAGACTTTGGACTGGCCAAGCTCTTAGGATCTGGGAAAAGCTATGTGACAACACGCGTAATGGGGACATTTGGATATGTTTCACCGGAGTATGCAAGCACGGGTATGCTTAATGAGGGCAGCGATGTGTATAGTTTTGGGATTCTACTCATGGAGCTAGTTACAGGAAGAAGTCCCATTGATTATTCTAGAGCACCTGCAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGTCGTGGTGAGGAGCTAGTTGATCCTTTGATCGAGATTCAGCCTTCTCCAAGATCTTTGAAGCGAGCTTTACTGGTTTGCCTTCGCTGTATAGATTTGGATGCCAATAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCAGATGATTTTCCCTTCCGTTCTGAACTTCGAACTAGAGAGAAAGATCCTGTTCCTTCTCAAGTAGACCTTTTCAAAAAGGTTCCGTATCCAAAAAGACATGTGGAGCCCGTAAATAAAGCGAGCTGGAGATGA 1353 0.4494 MAPSANSSGGSVPLLTTSIVGLKFYILVLILVAIVVTIILITVLCIRRNRTSKKSKMRRVKHSSGTIPLVSKEIVEVIKIEQVDGDESSRMKKQVECEIEESSSVSVESPSPSANIGWGRWYSLKELENATDGFAEGSVIGEGGYGIVYRGILQDGSIVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGAKRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWHAKVSDFGLAKLLGSGKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELVTGRSPIDYSRAPAEMNLVDWFKGMVASRRGEELVDPLIEIQPSPRSLKRALLVCLRCIDLDANKRPKMGQIVHMLEADDFPFRSELRTREKDPVPSQVDLFKKVPYPKRHVEPVNKASWR* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4398 450 PANTHER OS01G0323000 PROTEIN 12 420 - -
Mtr3g4398 450 ProSitePatterns Protein kinases ATP-binding region signature. 140 162 IPR017441 GO:0005524
Mtr3g4398 450 ProSiteProfiles Protein kinase domain profile. 134 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4398 450 Gene3D Transferase(Phosphotransferase) domain 1 210 417 - -
Mtr3g4398 450 CDD STKc_IRAK 140 406 - -
Mtr3g4398 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Mtr3g4398 450 PANTHER OS03G0227900 PROTEIN 12 420 - -
Mtr3g4398 450 Pfam Protein kinase domain 136 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4398 450 SUPERFAMILY Protein kinase-like (PK-like) 118 415 IPR011009 -
Mtr3g4398 450 Gene3D Phosphorylase Kinase; domain 1 89 209 - -
Mtr3g4398 450 SMART serkin_6 134 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4398 Mtr-Chr3 57932041 57937800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4398 120 406 Receptor kinase-like Gene Family AT4G02010 48.797 2.80e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Mtr3g4398 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4398 - - gmx:100779420 679.478