Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4392 ATGTACAACAATGGTGAGCATGTGCTTAATATTCCTCCACCAGCTCAAGGTGGTGGTTGGACTCCAACACCTCCAAAAAAAACACCTCCAAAAATGACACCTTCAAAAAAGACACCTCCGCACCAGGTTAGTAGCAGTGAGTTGACCAACTCCAGTTACTCTGGCCCAGTAGATCCTGTATTGCCACCACCACACCCAACGGTTGCACTTGGGTTCAACCAGAGCTCATTCAGTTATGAAGAGTTATCAACTGCCACCGGTGGGTTTTCAAAACAAAACTTGTTGGGTCAAGGTGGGTTTGGATATGTACATAAAGGTATTCTCCCTAATGGTAAGGAAATAGCGGTGAAGAGCCTTAAATCAACTGGTGGACAAGGTGACAGAGAATTTCAAGCTGAGGTTGATACTATAAGCCGTGTACATCATCGCTATCTTGTCTCGCTTGTTGGCTATTGCATTTCTGAATCTAAAAAGCTTCTTGTTTATGAATTCGTTCCCAACAAGACCCTTGATTATCACCTTCATGGAAAGGGTCGACCTGTGATGGATTGGGCCACAAGGCTTAAAATTGCGGTTGGATCCGCCAAAGGACTTGCTTATTTACACGAGGACTGTCACCCTAGAATCATTCACCGAGACATCAAGGGTGCAAACATTCTAATTGAAAACAACTTTGAAGCCAAAGTGGCAGATTTTGGATTGGCAAAATTTACTCAAGACACTAACACTCATGTTTCTACTCGTGTGATGGGAACATTTGGGTATATGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGATAAATCTGATGTCTTCTCGTATGGTGTTATGCTTTTGGAGCTCATAACAGGACGACGGCCAGTCGGTACCGCCGGCAGTGATTACGAGGAAGATAGTTTAGTTGATTGGGCTAGACCACTTTGTTCAAAAGCACTGGAATATGGAATATATCTTGGATTGGTGGATCCACGTTTAGAGGAAAATTATGAGAAACAAGATATGACACGTATGGTAGCTTGTGCTTCTGCTTGTGTTAGGCACTCAGGAAGAAGGCGTCCAAGAATGAGTCAGATTGTACGGGTACTGGAAGGAGATGCTTCACTAGAAGTGCTTATAAACCAGGATGGAGTGAAACCTGGACATAGTGCTATGTACAGTAGCGCAAGTGGAGATTATGATGCAGGGACATACAGTGCTGACATGAAAAAGTTCCGGAAACTAGCATTGGAAAGTAGCACAGGGAGCAGTGAGTACGGTGCAACTAGTGAGTATGGACTCAACCTTTCCGCCTCGAGCAGTGATCAATCTTCTGTTGATTATACTAGGAGGACGGTAACTGGAACCGGAGGCGGATCAAAATTCCATGAAAAATAA 1377 0.4401 MYNNGEHVLNIPPPAQGGGWTPTPPKKTPPKMTPSKKTPPHQVSSSELTNSSYSGPVDPVLPPPHPTVALGFNQSSFSYEELSTATGGFSKQNLLGQGGFGYVHKGILPNGKEIAVKSLKSTGGQGDREFQAEVDTISRVHHRYLVSLVGYCISESKKLLVYEFVPNKTLDYHLHGKGRPVMDWATRLKIAVGSAKGLAYLHEDCHPRIIHRDIKGANILIENNFEAKVADFGLAKFTQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVGTAGSDYEEDSLVDWARPLCSKALEYGIYLGLVDPRLEENYEKQDMTRMVACASACVRHSGRRRPRMSQIVRVLEGDASLEVLINQDGVKPGHSAMYSSASGDYDAGTYSADMKKFRKLALESSTGSSEYGATSEYGLNLSASSSDQSSVDYTRRTVTGTGGGSKFHEK* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4392 458 SUPERFAMILY Protein kinase-like (PK-like) 69 363 IPR011009 -
Mtr3g4392 458 Gene3D Transferase(Phosphotransferase) domain 1 165 376 - -
Mtr3g4392 458 MobiDBLite consensus disorder prediction 17 36 - -
Mtr3g4392 458 MobiDBLite consensus disorder prediction 415 458 - -
Mtr3g4392 458 MobiDBLite consensus disorder prediction 415 449 - -
Mtr3g4392 458 MobiDBLite consensus disorder prediction 37 56 - -
Mtr3g4392 458 SMART serkin_6 89 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4392 458 Pfam Protein tyrosine and serine/threonine kinase 92 362 IPR001245 GO:0004672|GO:0006468
Mtr3g4392 458 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 27 417 - -
Mtr3g4392 458 MobiDBLite consensus disorder prediction 1 61 - -
Mtr3g4392 458 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 27 417 - -
Mtr3g4392 458 ProSiteProfiles Protein kinase domain profile. 89 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4392 458 Gene3D Phosphorylase Kinase; domain 1 66 164 - -
Mtr3g4392 458 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Mtr3g4392 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4392 Mtr-Chr3 57874311 57877687 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4392 67 443 Trihelix Transcription Factor Family AT1G70460 57.895 1.07e-152 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Mtr3g4392 PK_Tyr_Ser-Thr 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4392 - - gmx:100806299 666.766