Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4381 ATGGAAGGTCATGAAATGGATCTCGTTCATTCACAAAACCAGAATGCTGCTGATCAAGAAATGCTTGATGCTACTGCTGATGACACAAAAGTCAATTCTACCCTCACTCCTCAACTTGAACATCAACAACCAAAACCTAAAGTTAAGAACGTTACAGAAGTCAATAACAATAATAATAACAATGCTGGCGAGATGGCTGCTTATGATGAAGCCGGTACGCCTATGGAGCGAGAAGCCTTTATGAAAGAGCTCGAGCATTTCTACAGATCGAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATCAAGTGCCGTTGAATTGCCTCAAGTTATGGAGAGCTGTTATCAGACTAGGTGGCTATGAAGTGGTAACTGCATCGAAGTTGTGGCGTTCAGTAGGAGAGTCTTTCCACCCTCCTAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTCGGATCACTCCATCAACCTTCGAGTGTGGAAAAAGAGACCGCTGTTTATCAGGCTCCAGGCTCAGGTAGGGCGCGGAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTATGGGATACGGCGAGGTTCCTGAGTCAGCTGTTAAGGACAAGAACTTCAGTCCCACACCAAAACGTGAAAAGAACCTAAAAAATATCGGTGTGATCAACAAACAGAGAACACCGTCTGGTATGGATGACAGAGCTGCAAATATAGAAGGAGACAGGCAATTGGTCACAGCAGTGGTGGACATTGGACCCCCAGCTGATTGGGTGAAGATCAATGTGCGGGAAACGAAGGATTGTTTTGAAGTGTATGCTCTAGTTCCTGGGCTCCTTCGTGAAGAGGTACGGGTCCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTATGCCAGAAAATGCTGACAATCCATGGGGTATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCGAGAATTGATCCGCTCCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTCGAGCAGGGAGCTGTGTGA 1119 0.462 MEGHEMDLVHSQNQNAADQEMLDATADDTKVNSTLTPQLEHQQPKPKVKNVTEVNNNNNNNAGEMAAYDEAGTPMEREAFMKELEHFYRSRSLEFKPPKFYQVPLNCLKLWRAVIRLGGYEVVTASKLWRSVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLMGYGEVPESAVKDKNFSPTPKREKNLKNIGVINKQRTPSGMDDRAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPENADNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4381 372 Pfam ARID/BRIGHT DNA binding domain 76 161 IPR001606 GO:0003677
Mtr3g4381 372 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 15 369 IPR045147 GO:0006357
Mtr3g4381 372 Gene3D - 75 172 IPR036431 GO:0003677
Mtr3g4381 372 CDD ACD_sHsps_p23-like 287 366 - -
Mtr3g4381 372 MobiDBLite consensus disorder prediction 35 63 - -
Mtr3g4381 372 Gene3D - 270 371 IPR008978 -
Mtr3g4381 372 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 15 369 - -
Mtr3g4381 372 Pfam Hsp20/alpha crystallin family 287 368 IPR002068 -
Mtr3g4381 372 ProSiteProfiles ARID domain profile. 74 165 IPR001606 GO:0003677
Mtr3g4381 372 SMART ARID_2 71 161 - -
Mtr3g4381 372 SMART bright_3 75 166 IPR001606 GO:0003677
Mtr3g4381 372 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 271 372 IPR002068 -
Mtr3g4381 372 SUPERFAMILY ARID-like 68 171 IPR036431 GO:0003677
Mtr3g4381 372 SUPERFAMILY HSP20-like chaperones 280 367 IPR008978 -
Mtr3g4381 372 CDD ARID 76 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4381 Mtr-Chr3 57726370 57732278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4381 64 369 ARID Transcription Factor Family AT1G76510 73.616 8.53e-154 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr3g4381 ARID 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4381 - - lang:109344023 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4381 3 57726370 57732278 Mtr3g4381 3 57726370 57732278 ECH