Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4379 ATGGCATACCAGGGTCCAAGTTCAGGATCAAGTTCGAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACTACTTATACCAAAGTCTTCGTTGGTGGATTGGCATGGGAAACTCAGAGTGAAACTATGCGCCGTTACTTTGAACAATTTGGAGATATTCTTGAAGCCGTTGTCATCACTGATAAGAACACCGGACGATCCAAAGGCTACGGTTTTGTGACTTTCCGTGATCCAGAGGCTGCTAGGAGAGCCTGTGCTGATCCAAGTCCTGTTATTGATGGTAGAAGGGCTAATTGTAACTTAGCTTCACATGGTCGTCCACGTGGACCCCCTATCTCCTATGGACGGGTAAGACCTGCATCCCCTTATGTTGGAAGTTTGCAACCTGCCCGTGGTGCTTACGTTGGAGGTTATGGCTACCAACAACCTCTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTATGGGTATACGACGTATGGACCTGAATACGTATACCCACAGGGTATGTACAACCCTTATGCAGGTCAACAACAGTACCTTCAGATTTATGGTGTGCCTGGTGCGATGAATACAACTATTTATCCTTATGGACAATTGGGTCAAGCTATTCCTGGCGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGGTCCAATGTTAATGCAATAACAACTTCACCCGTGCCTGCCATTCAAGTCCCATATCCTAGCGGAATTGCTGCACCAGTTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGATGGTTGA 846 0.4598 MAYQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYVGGYGYQQPLSYGYQQGMVYPPYGYTTYGPEYVYPQGMYNPYAGQQQYLQIYGVPGAMNTTIYPYGQLGQAIPGGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPVPAIQVPYPSGIAAPVPGQPQFIVSPQFMQGSGPDQTDG* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4379 281 SUPERFAMILY RNA-binding domain, RBD 28 142 IPR035979 GO:0003676
Mtr3g4379 281 CDD RRM_RBM24_RBM38_like 29 104 - -
Mtr3g4379 281 Gene3D - 5 114 IPR012677 -
Mtr3g4379 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 106 IPR000504 GO:0003723
Mtr3g4379 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 87 IPR000504 GO:0003723
Mtr3g4379 281 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 4 277 - -
Mtr3g4379 281 SMART rrm1_1 30 102 IPR000504 GO:0003723
Mtr3g4379 281 PANTHER BOULE-RELATED 4 277 IPR037366 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4379 Mtr-Chr3 57698652 57703903 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4379 1 166 C2H2 Transcription Factor Family AT2G19380 31.073 1.29e-17 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4379 3 57698652 57703903 Mtr3g4379 3 57698652 57703903 ECH