Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4376 ATGTCAAGATCTGAATTAAGGAATGATGACCAGCAACAACCGCTACCAGAACATCCAACCATAACCCCTGCGAGTATCGATAAGGACGAACCACCGGTGGTCGATATGCCATTTTCTCCAGCCCCTTCCTTCGAGGACCAACAACAGCCACTGCCACAACAACCAACCATCAATGTTACCACCATCAATAGTGGTGAATCACATGTAGCAACGATGTTGACCATTGTGCCATCTTCTTCAGCCCTTCCCTTATCTTCTATCTCAACTGGTGCCTCCAAAAAGCGTAGAGGCAGACCTCTTGGTTCTCGCAATGAAATCCAGTCTAAAAAAAGGGCTTCTGGATCTGTGAGACTTGCTAATGCCCACATTATGATGGTGAATGTGCAAGAGGGAAGATTTGAGATCATATCACTTGGTGGGTCTTTGCTTCCTGATAAAAAAGAAAGCCATTGCAAAGTATTTGAGGGCTTAAATGTGAGTTTGTCATTAGATGGTAATGTATTTGGTGGTAGACTTGTTAAAATTTTGATTGCTGCTTCCCCTGTTCAGATAGTATTGGGGAGTTACCCTGTAGGAAGTCAAGAGGAAGTCGACTATGATCCAAAAGAGCCTCCTAAAGAAGACCCAAGTCCACCATCAGCTGAGAGTCAAGAGAAAGTTGAGTCTGACCCAAGTCCACCATCAACTGAGAGTCAAGAGAAAACCGAGTCTCACCTAAAAGATCCTTCTAAAGAAGACCCAAATCCATCATCAGAGGGTACTCTTAGCAATTCATCTTCCGATGGGGTTAATATCCTAGTTTAA 804 0.4378 MSRSELRNDDQQQPLPEHPTITPASIDKDEPPVVDMPFSPAPSFEDQQQPLPQQPTINVTTINSGESHVATMLTIVPSSSALPLSSISTGASKKRRGRPLGSRNEIQSKKRASGSVRLANAHIMMVNVQEGRFEIISLGGSLLPDKKESHCKVFEGLNVSLSLDGNVFGGRLVKILIAASPVQIVLGSYPVGSQEEVDYDPKEPPKEDPSPPSAESQEKVESDPSPPSTESQEKTESHLKDPSKEDPNPSSEGTLSNSSSDGVNILV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4376 267 MobiDBLite consensus disorder prediction 196 214 - -
Mtr3g4376 267 MobiDBLite consensus disorder prediction 194 267 - -
Mtr3g4376 267 MobiDBLite consensus disorder prediction 215 232 - -
Mtr3g4376 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 189 IPR005175 -
Mtr3g4376 267 ProSiteProfiles PPC domain profile profile. 65 211 IPR005175 -
Mtr3g4376 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 130 260 IPR039605 GO:0003680
Mtr3g4376 267 MobiDBLite consensus disorder prediction 84 113 - -
Mtr3g4376 267 Gene3D - 105 203 - -
Mtr3g4376 267 MobiDBLite consensus disorder prediction 1 51 - -
Mtr3g4376 267 CDD DUF296 130 189 IPR005175 -
Mtr3g4376 267 MobiDBLite consensus disorder prediction 248 267 - -
Mtr3g4376 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 130 260 - -
Mtr3g4376 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 190 - -
Mtr3g4376 267 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4376 Mtr-Chr3 57682706 57686522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4376 130 202 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 45.946 4.21e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4376 - - mtr:MTR_3g116100 399.438