Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4374 ATGATGTTAGCAATGGAAGAAGTACTATGTGAACTTAGTGATCATGAAAAGAAAAACGAGCAAGGTCTACCACCTGGTTTCAGGTTTCACCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTATTTCAATAATGTCAAGTTTGCTGAAGTTGACCTCAACAGATGTGAGCCATGGGAACTTCCAGAAATGGCAAAGATGGGAGAAAGAGAGTGGTATCTGTTCAGCTTGAGAGACAGAAAATATCCAACTGGGCTTAGAACAAACAGAGCAACAAGTGCTGGTTACTGGAAAGCAACTGGGAAGGACAAGGAAGTTTACAGCTGTAGTAGTAGATCCCTTTTGGGGATGAAGAAGACCCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTACACTCTCATCACTTTTCTCCTTCGAATACCTGTAAGGAAGAGTGGGTGATATGCAGAATATTTCATAAATCAGGGGAAAAGAGAAATTCACTACTCCAAATTCAAGGACATTTAGGTGGTAATCCTAATTTAAGCCCCCAAAAAAGCTGTTTACCTCCTACACCACTTTTACTTGCAACTTCATTTACACAACTAGACCAAAATGACCAATTACTCTCACATTCTCATAATATTTTCCCATTACCTACATTCCAACCTTCCTTCTCAATGATCAATCACACCACCAGAAACAACAATAATAGTCCATCTTCAGAACTACTCTTCAAGTCACAACAAAATTACACCATGAAGCAGACCATTCCAAAAACAGAAGCTACTTTCTATGATCAGCAGAAATCAATAGATGATGCTCTTAACATAAGATGGATTATTGACAATAATAATAATTATGAAAACTCTTTATTCCCTGTGGAGATGGAGATGGAGATGGAGATGGATGGTGCTGCTCATGATCTGATTGCATTCTCAGGAGCTGCTACAAATGCTGAATTTAGGGACATATCAATTATTAACAGTAGAGGAGGAGGAGGAGTAGTTGGTCCTATGGGAATAGATTCTTGGCCACATGCTCAACTTGTCTAA 1095 0.3909 MMLAMEEVLCELSDHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTYFNNVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATSAGYWKATGKDKEVYSCSSRSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLHSHHFSPSNTCKEEWVICRIFHKSGEKRNSLLQIQGHLGGNPNLSPQKSCLPPTPLLLATSFTQLDQNDQLLSHSHNIFPLPTFQPSFSMINHTTRNNNNSPSSELLFKSQQNYTMKQTIPKTEATFYDQQKSIDDALNIRWIIDNNNNYENSLFPVEMEMEMEMDGAAHDLIAFSGAATNAEFRDISIINSRGGGGVVGPMGIDSWPHAQLV* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4374 364 Gene3D NAC domain 32 179 IPR036093 GO:0003677|GO:0006355
Mtr3g4374 364 Pfam No apical meristem (NAM) protein 24 151 IPR003441 GO:0003677|GO:0006355
Mtr3g4374 364 ProSiteProfiles NAC domain profile. 23 174 IPR003441 GO:0003677|GO:0006355
Mtr3g4374 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 13 290 - -
Mtr3g4374 364 SUPERFAMILY NAC domain 18 174 IPR036093 GO:0003677|GO:0006355
Mtr3g4374 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4374 Mtr-Chr3 57670251 57672836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4374 1 180 NAC Transcription Factor Family AT1G76420 75.000 3.72e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr3g4374 NAM 3.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4374 - - mtr:MTR_3g116070 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4374 3 57670251 57672836 Mtr3g4374 3 57670251 57672836 ECH