Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4354 ATGGAGGCAGAGCATGAGAACAGTGGAGGAGGAGGAGGACTTTATGTGAAAGTTATTATGACCGATGAACAAATGGAACTTTTAAGACAACAAATATCTGTCTACACCACCATTTCTGACCAACTTGTTGAGATGCATAAATCCATTACCACTCAACATGACCTCGCTGGACTGAGACTTGGTAATTTGTACTGTGATCCACTGATGATGGCTTGCTCTGGACACAAGATAACTTCGAGGCAGCGTTGGACTCCAATGCCTATCCAGCTTCAAATACTCGAGCGTATTTTCGATGAAGGCAATGGCACTCCCACCAAACAGAAGATCAAAGACATAACCATTGAACTAGGGCAACACGGTCAAATATCCGAGACTAATGTTTATAATTGGTTCCAGAACAGAAGAGCACGTTCAAAGCGCAAGCAATCATCAGTTCCTGCAGGAAATCATGCAGAGCCAGAGGCAGACACAGAAGTTGAGTCTCCAAAAGAGAACAAAACATGTGAAGAAAGCGATCAAGTTCAGTTCTTTGAGAGTTTATCACCTCATCGGGTCAAGGATATGTACCTTCAGAGTCCTGACATAGGATTTGAGCACTTGTTGGGAAAAATTGAAGTTGCAGGCTGCTATAATTCTTACTTTCTTTGA 648 0.4259 MEAEHENSGGGGGLYVKVIMTDEQMELLRQQISVYTTISDQLVEMHKSITTQHDLAGLRLGNLYCDPLMMACSGHKITSRQRWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQSSVPAGNHAEPEADTEVESPKENKTCEESDQVQFFESLSPHRVKDMYLQSPDIGFEHLLGKIEVAGCYNSYFL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4354 215 SUPERFAMILY Homeodomain-like 79 143 IPR009057 -
Mtr3g4354 215 Pfam Homeodomain 80 140 IPR001356 GO:0003677
Mtr3g4354 215 CDD homeodomain 80 142 IPR001356 GO:0003677
Mtr3g4354 215 Gene3D - 80 145 - -
Mtr3g4354 215 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 215 IPR044559 GO:0003700
Mtr3g4354 215 MobiDBLite consensus disorder prediction 153 171 - -
Mtr3g4354 215 ProSiteProfiles 'Homeobox' domain profile. 76 141 IPR001356 GO:0003677
Mtr3g4354 215 MobiDBLite consensus disorder prediction 139 171 - -
Mtr3g4354 215 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 1 215 - -
Mtr3g4354 215 SMART HOX_1 78 145 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4354 Mtr-Chr3 57516220 57518777 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4354 14 213 Wox Gene Family AT4G35550 52.193 6.35e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Mtr3g4354 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4354 - - gmx:100820530 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4354 3 57516220 57518777 Mtr3g4354 3 57516220 57518777 ECH