Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4352 ATGAAAGGAGCCAAGTCCAAGGGTGAATCGAAGAAAGCCGATGCTAAGCTTGCCGTTAATAAGAAGGGCGCCGCCGCTACTAAGGGCGGAAGGAAACCAGCCAAGGGAAAGGAACCAAAGGACCCTAACAAGCCTAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGGAGGATTTTAGGAAGCAGTTCAAGAAGGATAACCCTGACAACAAAGCTGTGTCCGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGTCATTGTCTGAAGCTGAGAAAGCACCATATGCAGCAAAAGCAGAGAAAAGGAAGGCAGAATATGAGAAAACCATGAAGGCATATAACAAGAAACAGGCTGAAGGTCCAGCTGCTGTTGAGGAAGAAGAATCTGGGAAATCAGAATCTGAAGTGCATGATGAGAATGAGGATGATGATGAGGATGGCAGTGAAGAGGAGGAGGATGACGAGTAG 468 0.4722 MKGAKSKGESKKADAKLAVNKKGAAATKGGRKPAKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKTMKAYNKKQAEGPAAVEEEESGKSESEVHDENEDDDEDGSEEEEDDE* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4352 155 PANTHER HIGH MOBILITY GROUP B PROTEIN 2-RELATED 1 154 - -
Mtr3g4352 155 MobiDBLite consensus disorder prediction 94 136 - -
Mtr3g4352 155 SMART hmgende2 44 115 IPR009071 -
Mtr3g4352 155 Coils Coil 96 116 - -
Mtr3g4352 155 Gene3D High mobility group box domain 29 136 IPR036910 -
Mtr3g4352 155 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Mtr3g4352 155 MobiDBLite consensus disorder prediction 1 18 - -
Mtr3g4352 155 MobiDBLite consensus disorder prediction 1 50 - -
Mtr3g4352 155 MobiDBLite consensus disorder prediction 31 45 - -
Mtr3g4352 155 MobiDBLite consensus disorder prediction 64 155 - -
Mtr3g4352 155 MobiDBLite consensus disorder prediction 137 155 - -
Mtr3g4352 155 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Mtr3g4352 155 CDD HMGB-UBF_HMG-box 45 111 - -
Mtr3g4352 155 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 154 IPR031061 -
Mtr3g4352 155 SUPERFAMILY HMG-box 32 115 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4352 Mtr-Chr3 57499153 57501188 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr3g4352 HMG_box 2.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4352 K25507 - lang:109352139 169.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4352 3 57499153 57501188 Mtr3g4352 3 57499153 57501188 ECH