Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4345 ATGGGAGATGGTGCTGCAGTGACATCATCTGCAACCAATACCATGATGGAAGCTCCACCACAAGATGAAAATTTAATGGATTTTGATTACATGAGTGAACTTTTGTTGGATGGTTGTTGGTTGGAAGCTTCTGCTGATGGATCTGAGTTCTTGCTGCAAAGTTCTCCTTTTTCCAATCCAATCTTTGACCCTTCATTCTCTTGGCCTGTCTTGGAGAACAACGAGCAACCCGGCAATGATGTTCGGCATGAGTCTCAAGATGTTCCTCTTGGTACTGAGCAGGAAAGCCGGATTATAGTTAATAATGCTGGTAGTAGCGACCTGCAGCAGTGTGAGTTTAAGACTCATTTGGGTGAAGGGGTTAGTAGGTTGTGGATTCCACCGACGCCTAATCCAGGACCTGGTGGATCTTCCATAACAGAAAAGCTGATAAGGGCCCTCAAGTGGATCAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTGCCGGTTAATAGAGGGGATGATAGGCCAATTCTGAGAGCTAATGATCTTCCTTTTTCACTTGAATCAAGGTCTTTAAACCTTGCAAAGTACCGAGAAATCTCTGTGAGATATCAGTTTTCTGCAGAGGTGGAGGACTCAAAGGAGTTGGTGGCGGGTTTGCCTGGTCGAGTTTATAGGGATAAGATTCCTGAGTGGACACCTGATGTTCGATTCTTCAGGAGTGATGAGTATCCACGAGTTGACCATGCTCAAGAGTGTGATGTACACGGAACATTAGCGGTTCCAGTGTTTGAACAAGGGAGCAGGACATGTTTGGGAGTTATTGAAGTGGTGATGACGACACAACAGAGCAACTATGGCCGTGAACTTGAGACTGTTTGCAAAGCGCTAGAGGTTGTTGATCTCAGCAGCTCTGGACATTCAAGTCCTCAGAATGTGAAGGCATGTGTCAAGTCCTATGAAACCGCACTACCCGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTAGCTCAGACGTGGGTCTCTTGCATCCAACAGGGAAAAGATGGCTGCCGGCACTCTGATGATAATTACACACACTGTATATCTCCGGTGGAGTATGCTTGCTATGTTGGTGATTCCTCGGTCAGGTTTTTCCATGAGGCTTGCATGGAGCATCACTTATTAATAGGTCAAGGTGTTGCCGGGGGTGCTTTTATGACAAATCAACCGTGCTTCTCAACCGACATAACTTCTTTAAGCAAGACAGACTATCCACTGTCTCATCATGCCAGGTTGTTTGGATTGCGTGCTGCAGTTGCCATTCGACTCCGAAGCATCTATAGTATCTCAGACGACTATGTTCTTGAGTTCTTCTTGCCTGTAGATTGCAATGACGGTGAAGAACAGAAAAAGATGCTCACATCATTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACAGATAAGGAATTGGAGAAAAATAACTTATCATCTAATGAAGTGATGGCCGTTGCTGATATTGGATTTGCTACCGATGCAGTTCAGTCGGGACTCCAACACAAGAGGATGGCTGTCTCATTGGACGGCGAAGAAAAGTTTAATGAAACAATGTCTAGCAAGTTCTCGGAACAAAGGCGGCAACAAGAAAGTCTTACTTTAAGAGGAGATGCTGACTGTGGTAGGGAGTGTTCTCCTTCTGTCGAGGGTAACTTCTTGTCAAGTTTGGGAGTAAATAGAACAGGAGAGAAAAGACGGGCCAAGGCAGAGAAAACCATCACTCTTCAAGTCCTTAGACAATATTTCGCTGGAAGTCTAAAAGATGCTGCAAAGAATATTGGCGTCTGTACTACAACTCTGAAAAGGATATGCAGGCAACATGGTATAAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTTGGTCATTCCTTGCAGAAACTTCAACTCGTCATTGACTCGGTTCAAGGTGCCTCTGGGTCATTTCAAATTGATTCCTTCTATTCAAAATTCTCGGATCTATCGTCTCCAAATTTATCAGGAAGCACCCTAATCTCAACTCTGAATCAAGTTGATAATCCAGTCTCATTAAGCATACAGCCAGATCCCGACTCGTTGAGTCCAGAAGGTGCATCGAAATCACCTTCCTCTTCATGTAGTCAGAGTTCCTATTCAAGCCATTCCTGTTCCAGCTTGTCAGAGCAACAACACCACACAAACAATGTTGCTGCTGGCAACAAAGATTCATTGGTTGGTGAAGACTCTGTCGATGTTGTGTTGAAGAGAATCAGAAGTGAAGCAGAACTTAAAAGCCTGATTCCAGATAATAAATCAAAACTCATGCCAAGATCACAAAGCCAGGAAACACTTGGTGAACACCCGAAAACCGAGTATCGCAAGTCCTTATTAAAAACCACTCGCAAAGCGTCTCAAAAGGAGGATGCTCATAGAGTAAAAGTTACATTTGGAGATGAGAAAACCCGGTTTAGGTTGCCAAAGATCTGGTGTTATGAAGATCTTGTGCAGGAAATTGCTAGGAGATTTAATGTAAGTGAAATGAGCAAATTTGATATCAAATATTTGGACGATGATTATGAATGGGTATTACTAACTTGTGATGCAGATTTAGAGGAGTGCATCGATGTTTCTCAATCTTCTGAGACTAGTACCATCAAACTTTGTCTGCAACCCTCCAGTAATTTTATCAGGAGTTCTTTAGAATTTAGATAG 2730 0.4308 MGDGAAVTSSATNTMMEAPPQDENLMDFDYMSELLLDGCWLEASADGSEFLLQSSPFSNPIFDPSFSWPVLENNEQPGNDVRHESQDVPLGTEQESRIIVNNAGSSDLQQCEFKTHLGEGVSRLWIPPTPNPGPGGSSITEKLIRALKWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESRSLNLAKYREISVRYQFSAEVEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSDEYPRVDHAQECDVHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLSSSGHSSPQNVKACVKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYTHCISPVEYACYVGDSSVRFFHEACMEHHLLIGQGVAGGAFMTNQPCFSTDITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSISDDYVLEFFLPVDCNDGEEQKKMLTSLSMIIQRVCRSLRVITDKELEKNNLSSNEVMAVADIGFATDAVQSGLQHKRMAVSLDGEEKFNETMSSKFSEQRRQQESLTLRGDADCGRECSPSVEGNFLSSLGVNRTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQIDSFYSKFSDLSSPNLSGSTLISTLNQVDNPVSLSIQPDPDSLSPEGASKSPSSSCSQSSYSSHSCSSLSEQQHHTNNVAAGNKDSLVGEDSVDVVLKRIRSEAELKSLIPDNKSKLMPRSQSQETLGEHPKTEYRKSLLKTTRKASQKEDAHRVKVTFGDEKTRFRLPKIWCYEDLVQEIARRFNVSEMSKFDIKYLDDDYEWVLLTCDADLEECIDVSQSSETSTIKLCLQPSSNFIRSSLEFR* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4345 909 MobiDBLite consensus disorder prediction 696 737 - -
Mtr3g4345 909 Gene3D - 816 897 - -
Mtr3g4345 909 PANTHER PROTEIN NLP8 23 905 IPR045012 GO:0003700
Mtr3g4345 909 SUPERFAMILY CAD & PB1 domains 809 900 - -
Mtr3g4345 909 CDD PB1_NLP 816 897 IPR034891 -
Mtr3g4345 909 SMART PB1_new 815 898 IPR000270 GO:0005515
Mtr3g4345 909 MobiDBLite consensus disorder prediction 774 796 - -
Mtr3g4345 909 ProSiteProfiles RWP-RK domain profile. 580 661 IPR003035 -
Mtr3g4345 909 ProSiteProfiles PB1 domain profile. 815 898 IPR000270 GO:0005515
Mtr3g4345 909 PANTHER PROTEIN NLP4 23 905 - -
Mtr3g4345 909 Pfam PB1 domain 816 897 IPR000270 GO:0005515
Mtr3g4345 909 Pfam RWP-RK domain 593 641 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4345 Mtr-Chr3 57386550 57391906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4345 21 900 NLP Transcription Factor Family AT1G20640 48.488 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr3g4345 PB1 2.3e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4345 - - gmx:100790922 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4345 3 57386550 57391906 Mtr3g4345 3 57386550 57391906 ECH