Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4318 ATGTCATCATCGGCGGTGAGAAGCAAGAACTCCGGCAACGACGACGAAGCCAAACACTATCCTCCCCCACTCGCCTCTCACAACGACGTCGTTAACGACCCTACTCTCTTTTGGGACACTCTTCGTCGCTTTCACTTTCTCATGGCTACCAAATTCATGATTCCTGTGATTGGTGGTAAGGAGCTTGATTTGCACGTTCTCTACGTGGAAGTTACAAGGAGAAGCGGTTATGAGAAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCTACTACTACAAGCGCTTCTTTTGTACTAAGAAAACACTATTTGAATCTTCTTTATCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTGTTTACACCCCCTCACCAGATGCATTTTCTGGTAACAGTCCATCTTGGAAACCGGAATTAGCTATTGTTCAATATTCACCTAAAATGGTAAATTATAGTGCTGAATCTCACGATGAAGTTGATGTAGATAATTCATTACTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGATTGTGGTTATTTAGTGTCAGTGGAATTGGGTTCAGAAGTTCTCAAAGGGGTGCTTTACCATCAAGAAAAAGTGGTTTCTCCTTCATCATTGGTTACACAACACAACGGTGCCATTGAGCCATTCAATCACCAAACTCATCGCTTGGGTAGGAGGAAGAGAAGAAAAAGAAAGTGGGATCCCAACTATCCAAAGCCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAGCATTACAAGCTCAAAGAACTCTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGTCAGTCCTGGAATAGTCTCAGCCCTGAAGAAAGAATGATTTACCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAATTGTCGGAGTACAAACAGAAAATGAAGGTTGGGCAGACAGAAGAACTCGGGCGTCCATAA 993 0.4129 MSSSAVRSKNSGNDDEAKHYPPPLASHNDVVNDPTLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPVYTPSPDAFSGNSPSWKPELAIVQYSPKMVNYSAESHDEVDVDNSLLLGKGTIEGKFDCGYLVSVELGSEVLKGVLYHQEKVVSPSSLVTQHNGAIEPFNHQTHRLGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELSEYKQKMKVGQTEELGRP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4318 330 SUPERFAMILY ARID-like 27 132 IPR036431 GO:0003677
Mtr3g4318 330 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 325 - -
Mtr3g4318 330 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 8 325 - -
Mtr3g4318 330 SUPERFAMILY HMG-box 246 319 IPR036910 -
Mtr3g4318 330 SMART hmgende2 248 317 IPR009071 -
Mtr3g4318 330 CDD ARID_HMGB9-like 33 118 IPR045303 GO:0003677
Mtr3g4318 330 Gene3D - 24 128 IPR036431 GO:0003677
Mtr3g4318 330 ProSiteProfiles ARID domain profile. 31 122 IPR001606 GO:0003677
Mtr3g4318 330 SMART bright_3 32 123 IPR001606 GO:0003677
Mtr3g4318 330 MobiDBLite consensus disorder prediction 1 26 - -
Mtr3g4318 330 Coils Coil 305 325 - -
Mtr3g4318 330 CDD HMGB-UBF_HMG-box 249 313 - -
Mtr3g4318 330 SMART ARID_2 28 118 - -
Mtr3g4318 330 Pfam HMG (high mobility group) box 249 316 IPR009071 -
Mtr3g4318 330 Pfam ARID/BRIGHT DNA binding domain 36 118 IPR001606 GO:0003677
Mtr3g4318 330 Gene3D High mobility group box domain 234 328 IPR036910 -
Mtr3g4318 330 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 249 316 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4318 Mtr-Chr3 57096499 57099100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4318 18 321 ARID Transcription Factor Family AT1G76110 63.844 2.53e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr3g4318 ARID 8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4318 - - gmx:100784746 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4318 3 57096499 57099100 Mtr3g4318 3 57096499 57099100 ECH