Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4317 ATGGTACGGATCAAACTCTCAAGATCCATCGGACCTTTGCCAAGACGTATTTTTCGATCATCTTTGCCATTGACTCCATGGTATCTTCCATGTTGCCCGCCGATGATTGATGGGAAATGCCCTAATTGTTCGTATGATCCTTCTACCGACGAAGAAGAAATTGTTGGTGGATCTTCAAAACCAACTACTGAAACCAACGACGAAAACGATGATGTGCTTGATAATTATTGTTCCTTCTGCATAGAGTTGCCTGACAGACCTGTCACTACTCCATGTGGGCACAATTTTTGCTTAGAATGTTTTAAGAAATGGATGAAACAAGGAAAGCAAACTTGCCCAAATTGTAGGACTACAATTCCAACAAAAATGGCGAGTACTCCACGAATCAACACACAATTGGCAATCACCATGCGTATGGCTAAACTAGCCAGATCGAAAGGTGTTGGAGGAAGTATTACTCCAAAAGTTCATTGCATTGACCACTACGCCATTCTCGTGACTATTCCAAAAGATCATTTTGGACCCATCGTAGCTGAGAATGATCCTACTAGGAATCGTGGGGTTCTTGTTGGTGATAAATGGAAGGATAGGATGGAATGCAGGCAATGGGGTGCTCATTTTCCCCATATTGCGAGGGTTGCAGGTCAAAAGAACCAAGGTGCTCAGTCTGTTGTTTTGTCTGGTGGTTACACACAAGATGAAGATCATGGTGAGTGGTTCACTTATACCGGAAGTGGTGGAAGAAATCAGTTCTTGGACCATCAATTTAATAATACGAATGAGGCCTTGCGACTCAGTTGCCGAAAAGGCTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACAGTCCTCTTATGCACCGGAAGCAGGAGTGAGATACGACGGGGTTTATAGAATTGATATATGTTGGTCCGAATTTGGAAAAAATGGTGAGAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAACCAGCGCCTTGGACAAGTGATTTATCTGGAGATTATCCCCGTACACTACCTTTTATCGAGGAGTTTAGGGATGCAGTTGATATTATTGAAAGGAATGGCGATCCATCATGGGACTTTGATGAGGAAAAAGGTTGCTGGTTGTGGAAGAAGCCTCCACCATTAAGTAAGAGGCCACTGAACATTGTGGATCCTATAGAGAATGCTCTGAATCCTCCACTGAAGCGGACGAAAGGTGCTGGTGGCAAGGCTGTGATGAAGTGA 1236 0.4369 MVRIKLSRSIGPLPRRIFRSSLPLTPWYLPCCPPMIDGKCPNCSYDPSTDEEEIVGGSSKPTTETNDENDDVLDNYCSFCIELPDRPVTTPCGHNFCLECFKKWMKQGKQTCPNCRTTIPTKMASTPRINTQLAITMRMAKLARSKGVGGSITPKVHCIDHYAILVTIPKDHFGPIVAENDPTRNRGVLVGDKWKDRMECRQWGAHFPHIARVAGQKNQGAQSVVLSGGYTQDEDHGEWFTYTGSGGRNQFLDHQFNNTNEALRLSCRKGYPVRVVRSHKEKQSSYAPEAGVRYDGVYRIDICWSEFGKNGEKVCRYLFVRCDNEPAPWTSDLSGDYPRTLPFIEEFRDAVDIIERNGDPSWDFDEEKGCWLWKKPPPLSKRPLNIVDPIENALNPPLKRTKGAGGKAVMK* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4317 411 CDD RING-HC 77 115 - -
Mtr3g4317 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 146 IPR013083 -
Mtr3g4317 411 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 62 157 - -
Mtr3g4317 411 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 164 392 - -
Mtr3g4317 411 ProSiteProfiles Zinc finger RING-type profile. 77 116 IPR001841 -
Mtr3g4317 411 Pfam Zinc finger, C3HC4 type (RING finger) 74 120 - -
Mtr3g4317 411 ProSiteProfiles YDG domain profile. 183 321 IPR003105 -
Mtr3g4317 411 SUPERFAMILY PUA domain-like 159 343 IPR015947 -
Mtr3g4317 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 164 392 IPR045134 -
Mtr3g4317 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 62 157 IPR045134 -
Mtr3g4317 411 SMART G9a_1 178 325 IPR003105 -
Mtr3g4317 411 Pfam SAD/SRA domain 186 324 IPR003105 -
Mtr3g4317 411 SMART ring_2 77 115 IPR001841 -
Mtr3g4317 411 Gene3D - 167 337 IPR036987 -
Mtr3g4317 411 SUPERFAMILY RING/U-box 71 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4317 Mtr-Chr3 57092059 57094357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4317 65 404 C2H2 Transcription Factor Family AT5G39550 54.521 4.25e-133 394