Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4313 ATGGCTCCTAGTCCGAAATCTGAAGCCGTCGTTTACCTTCATGGTAACCTCGATTTGAAAATCGTTGAAGCTCGTTATCTACCAAACATGGATATGCTTTCAGAGCGTTTTAGAAGATTCTTCTCCGCTTTCAACTCATGCAGCGCTAACATCACCACTAAAGGAAAAAACCATCTTACACGTCATCGTCACCATAAAATCATCACTAGCGATCCTTACGTTACCGTTTGTCTCGCCGGTGCTACAGTGGCGCGTACGCGCGTTATCTCAAACTCACAATCACCGAAATGGGAAGAGCATTTCAAAATTCCATTGGCTCATCCTGTTTCTCAAGTTGAATTCTACGTCAAAGATAACGACATGTTCGGTGCTGATTTGATCGGAATCGCAACCGTTTCTGCGAAGAGGATCTTATCAGGTGAAGATATAAGCGATTGGTTTCCGATTATAGGTTCATTCGGTAAACCTCCAAAACCTGATTGCGCTGTTTTTCTCGAAATGAAATTCACGAGATGCGATGAAAATCCTATGTATCGTTCCGGTGTTATTCCCGGTCCTGATAGGTTTGCGGTTCAGGATTCGTATTTTCCGGTTCGGCGAGGAGGATCGGTGACGCTGTATCAAGATGCACACGTTCCAGATTCGATGTTACCGGAGATTGAATTGGATGATGGTGTTGAGTTTCAGCAGGGGAAATGTTGGGAAGATATTTGTCACGCAATATTAGAAGCGCATCATTTGGTGTATATTGTTGGTTGGTCGATTTTTCATAAGGTGAAGCTTGTTAGAGAACCAACAAAGCCTTTACCTAATGGCGGGAATTTGAATTTGGGGGAATTACTCAAGTACAAGTCACAAGAAGGTTTAAGAGTTTTACTCTTGGTTTGGGATGATAAAACTTCACACAGCAAATTTTTCATTAACACGAATGGAATAATGCAAACTCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTTCATGTGTGTTGTCACCTCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGTTGTTGGGACGCTTTTTACGCACCACCAAAAATGTGTGATCGTTGATAGCCAAGCACATGGAAATAATCGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGTTATGATACACCTGAGCATAGACTTTTCCGTGATCTTGACACTCATGTGTATAAGGATGATTATCATAATCCCACATTTTCGGCAGGAACCAAGGGTCCAAGGCAACCATGGCATGATCTACATTGCAAAATCGAAGGGCCTGCTGCATATGATATACTAACTAATTTTGAGCAGCGCTGGAAGAAAGCCACCAGATGGTCTGAGTTGGGTCAAAAATTGAAAAGAGTATCTTCTTGGCACGATGATTCTTTGATCAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAATGTCAAATGATGATCCTGAGTTATGGGTTTCAAAGGAAGATGACCCTCAAAATTGGCATATTCAGGTTTTTCGATCCATAGATTCAGGCTCTTTGAAAGGATTTCCTAAGAATACATATGAAGCCGGGGCTCAGAATCTTGTTTGTGCTAAAAATTTAGTCATAGACAAGAGTATTCAAACAGCTTACATACATGCCATCAGATCTGCTCAGCATTTTATTTATATCGAGAATCAATACTTCATTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAATTTGATTCCTATGGAGTTGGCGCTGAAGATTGTCAGTAAGATCAGATCTCGGGAGAGATTTACAGTTTATATTGTCATTCCAATGTGGCCTGAAGGCGTCCCTTCTTCTGGCTCGGTGCAAGAGATTCTCTATTTTCAGGGACAAACTATGCAAATGATGTATGAAATCATAGCTCGGGAACTAAGATTTATGAAACTTAACGATAGCCATCCACAAGACTACCTCAATTTTTACTGTCTTGGTAACCGAGAGAAGTTTGCAACTGAAGTTTCAAGTCCAAATAGTTCACCTTCAGGCAATGGCGACACGGTTTCAGCTTCACAAAAGTTCCAACGGTTTATGATTTATGTACATGCCAAGGGAATGGTTGTGGACGATGAATATGCGATGGTTGGGTCTGCCAATATCAACCAACGATCTTTGGCTGGATCAAGAGATACCGAGATAGCAATGGGTGCATACCAACCCCATCATACATGGAGTAAGAAAAATGGACATCCTCGCGGTCAGGTATATGGGTATAGAATGTCCTTGTGGGCAGAGCACTTAGGGACCATACATGAATGCTTCAAGGAGCCCGAAAGTTTGGAATGTGTGGAGAGTGTGAACAAGATTGCTGAAGACAACTGGAGGAAGTTTACAGATGATGATTTTAAGCCATTGCAAGGGCATATTATGAAGTACCCCATCAAAGTGAATGCAAATGGGAAAGTAAGTTCTTTACCTGGATATGAGTCTTTCCCAGACGTCGGCGGCAAAGTGCTTGGTTCCCGTTCTACCCTTCCAAATGCTCTAACCACGTAG 2556 0.419 MAPSPKSEAVVYLHGNLDLKIVEARYLPNMDMLSERFRRFFSAFNSCSANITTKGKNHLTRHRHHKIITSDPYVTVCLAGATVARTRVISNSQSPKWEEHFKIPLAHPVSQVEFYVKDNDMFGADLIGIATVSAKRILSGEDISDWFPIIGSFGKPPKPDCAVFLEMKFTRCDENPMYRSGVIPGPDRFAVQDSYFPVRRGGSVTLYQDAHVPDSMLPEIELDDGVEFQQGKCWEDICHAILEAHHLVYIVGWSIFHKVKLVREPTKPLPNGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTNGIMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDSQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTHVYKDDYHNPTFSAGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWKKATRWSELGQKLKRVSSWHDDSLIKLERISWILSPSESMSNDDPELWVSKEDDPQNWHIQVFRSIDSGSLKGFPKNTYEAGAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRSRERFTVYIVIPMWPEGVPSSGSVQEILYFQGQTMQMMYEIIARELRFMKLNDSHPQDYLNFYCLGNREKFATEVSSPNSSPSGNGDTVSASQKFQRFMIYVHAKGMVVDDEYAMVGSANINQRSLAGSRDTEIAMGAYQPHHTWSKKNGHPRGQVYGYRMSLWAEHLGTIHECFKEPESLECVESVNKIAEDNWRKFTDDDFKPLQGHIMKYPIKVNANGKVSSLPGYESFPDVGGKVLGSRSTLPNALTT* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4313 851 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 170 IPR035892 -
Mtr3g4313 851 SUPERFAMILY Phospholipase D/nuclease 528 783 - -
Mtr3g4313 851 Pfam PLD-like domain 550 733 IPR025202 -
Mtr3g4313 851 PIRSF PLD_plant 2 851 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Mtr3g4313 851 PANTHER PHOSPHOLIPASE D 8 850 - -
Mtr3g4313 851 Pfam Phospholipase D C terminal 772 841 IPR024632 -
Mtr3g4313 851 Gene3D C2 domain 10 169 IPR035892 -
Mtr3g4313 851 CDD C2_plant_PLD 9 170 - -
Mtr3g4313 851 SUPERFAMILY Phospholipase D/nuclease 192 457 - -
Mtr3g4313 851 Gene3D Endonuclease Chain A 516 745 - -
Mtr3g4313 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 697 724 IPR001736 GO:0003824
Mtr3g4313 851 SMART C2_3c 16 146 IPR000008 -
Mtr3g4313 851 PANTHER PHOSPHOLIPASE D 8 850 IPR015679 -
Mtr3g4313 851 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 352 387 IPR001736 GO:0003824
Mtr3g4313 851 ProSiteProfiles C2 domain profile. 1 147 IPR000008 -
Mtr3g4313 851 Gene3D Endonuclease Chain A 225 475 - -
Mtr3g4313 851 Pfam Phospholipase D Active site motif 353 387 IPR001736 GO:0003824
Mtr3g4313 851 Pfam C2 domain 15 149 IPR000008 -
Mtr3g4313 851 SMART pld_4 352 387 IPR001736 GO:0003824
Mtr3g4313 851 SMART pld_4 697 724 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4313 Mtr-Chr3 57036844 57047228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4313 7 688 Phospholipase D Gene Family (Wang group) AT4G35790 65.857 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4313 K01115 - gmx:100795859 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4313 3 57036844 57047228 Mtr3g4313 3 57036844 57047228 ECH