Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4308 ATGAATGAAGATTGGAAGCCAAAAGTAGATATGGTTTTCTGTAGCTTTGAAGATGCTTGGGAGTTCTGGAACACTTACGGTGGTAAGGTTGGATTCGGAGTGAGGAAAGATTATACACACAGAAAAAAGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATGCGAAAGCCAGACAAGCGAGATTATAAAACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAGGACCACAACCACGAGTTACTTTTGCCAGAAACAACTCATATGTTGTCGTCTCAACGAAAGGTTTCTGAAATTCATTGTCAACAAATTGAACTAGCTGATAGTGTCGGTGTACAACAAAAGAAATCATTTGATTTATTGAGTAAAGAAGTAGGAGGCAGAACTAACTTGGGTTTTATACGTCTTGATCAAAAGAATTATCTTCGGAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCCGGCTATTTATTGCAATACTTTCAAAGAAAGACGGTAGAAAATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAAATCACCAATGTGTTTTGGGCAGATGCTAGGATGCTGGTTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTTAACATATTGCACAAATAGTTCGCACAGACCACTAGCAATCATCTCGGGATTTAACCACCATCGAGGAGCCGTAATTTTTGGAGCTGCATTATTATATGACGAAACTGCCGAGTCATACGAGTGGCTATTTGAGACATTTCTAGAAGCACATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGCCAAATCAATGGCAAAAGCATTAGCCGAGGTTATGCCTGAAGCTTACCATGGTTTATGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTAGTGACTTTAAGAAATGCATGTATGGTTATGAAGATGTAGAACAATTTGAAGATGGTTGGACATCCCTCCTTATAAAGTATGGTGTTCAGAAAAATGATTGGTTGCAAAGAATGTACAATATAAAGGAGAAATGGGCATCTTGTTACATGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACTTAGTGAAAGTGTGAATGCAGATATTAAAAATTTTATGAGTAAGAACTTGGATTTAATTAAATTTTTTGAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGCACGCCAAAAAATTCCAAGACTGAAGAACTCATATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATACTCCTACTATTTTCGACTTATTCCAACGTGAGTATGAGTTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCCAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAAAGCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATACGGACGTTACATCAGTGCCTGAGCCTTATATTTTAAAGAGGTGGACAAAGATAGCAAGAAGTAGAGCTTCACAAACTATTGGTGTTAGTCATGTGGTAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCACTTTATTAGGATAGTCACAGAAGGATGTAGAAGTCCAGAAGCTGTTGAGTTTCTTAAGGAAGTTGCTGATGAATTGGACGAGCAAATGCTAAAGTTTCAAAATATGCAAATAAGTAGTGAACAAGTGAATGGAACCTCTAACAATATTAAAAAGATATCAATTACTAATGATTGTGCAACACAAGTAAAGGGGTTTAAGAACAACGAAGGTCCAAAGGGTTCAAAACGTTGGAAAGGTTGGGTAGAAACAAAACTGGCCAAGAGAAAGAAACGTGCGAAGTCCATTGCTTCACAAATTCAAGAACCTATGAAGAACAAAGGTAAGCAGGGTTCCAAAAATATAAAGAGGCGGGATGAAGTGTCAAACATAAGTGCTCCACAAAGTCAAAAGCAATATGTTGTGTCCAACACTAGTGATTTACAACGTCAACAGCCATTTGCATCGTCAATTACAAGCGCACCTATATGGCTTAATAATGCATACAATCAACCATCTATGGGAGACGATGGAACTTCTAGTCAATTCGGTGTTGCTAGTTTTACTAGCTTATTGATGGTGCTGTCAAATGTCAATGCAATTCATGCTTCAAGGGCTGGTCATGCACGGATGTTGGTTGCTATGGCTTTTGGTTTGTTTTTCTTTCAAACAGTAGTGTAG 2439 0.3723 MNEDWKPKVDMVFCSFEDAWEFWNTYGGKVGFGVRKDYTHRKKDGSVSSCRFVCCKEGMRKPDKRDYKTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELLLPETTHMLSSQRKVSEIHCQQIELADSVGVQQKKSFDLLSKEVGGRTNLGFIRLDQKNYLRKKRERSLVQGEAGYLLQYFQRKTVENPTFYHAYQLDIEDQITNVFWADARMLVDYSYFGDVVSLDLTYCTNSSHRPLAIISGFNHHRGAVIFGAALLYDETAESYEWLFETFLEAHKQKMPQTVFTDQAKSMAKALAEVMPEAYHGLCTWHLMQNGIKHLGNLMKGESYFLSDFKKCMYGYEDVEQFEDGWTSLLIKYGVQKNDWLQRMYNIKEKWASCYMKKTLTLGMRSTQLSESVNADIKNFMSKNLDLIKFFERFEDVVEEKRYKELKCEFEARQKIPRLKNSYSDILQQVSKLYTPTIFDLFQREYELFEACFVKSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHTDVTSVPEPYILKRWTKIARSRASQTIGVSHVVEDLDLSPAQCYKEICPHFIRIVTEGCRSPEAVEFLKEVADELDEQMLKFQNMQISSEQVNGTSNNIKKISITNDCATQVKGFKNNEGPKGSKRWKGWVETKLAKRKKRAKSIASQIQEPMKNKGKQGSKNIKRRDEVSNISAPQSQKQYVVSNTSDLQRQQPFASSITSAPIWLNNAYNQPSMGDDGTSSQFGVASFTSLLMVLSNVNAIHASRAGHARMLVAMAFGLFFFQTVV* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4308 812 PANTHER OS03G0181600 PROTEIN 2 632 - -
Mtr3g4308 812 SMART 26again6 521 548 IPR006564 GO:0008270
Mtr3g4308 812 Pfam SWIM zinc finger 511 544 IPR007527 GO:0008270
Mtr3g4308 812 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 632 IPR031052 GO:0006355
Mtr3g4308 812 Coils Coil 609 629 - -
Mtr3g4308 812 MobiDBLite consensus disorder prediction 694 726 - -
Mtr3g4308 812 ProSiteProfiles Zinc finger SWIM-type profile. 510 546 IPR007527 GO:0008270
Mtr3g4308 812 Pfam MULE transposase domain 229 323 IPR018289 -
Mtr3g4308 812 Pfam FAR1 DNA-binding domain 21 107 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4308 Mtr-Chr3 56993670 56996748 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr3g4308 MULE 2.4e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4308 - - ccaj:109815076 937.947