Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4296 ATGACTCAAGATCTTGAGATGAAAGATCGTTCAACTCCTTCGAATTCCGTTTCTCCACCAGTTCCATCTACTTTGCAGCATTTGAAGGAGATAGCGTCCGTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGTGCTGTTCGTCTTACAATTGCATTGAGGAAGAAATTAACAGCTTCTGTTATATCTTCTTTTCTCGATCATGTTCTTACTCCTGGTTCTGAACCTCATGCTAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAGGTGGACGCTGCAACATCTGCCATTCAAACCCCTATCCCTACAGCTAAACACTTGTTGCCTGAGCTAGAAATTTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCTTCAGCTAGTGTTGCTTGGCTGAAGAATGTGAACAGAAGAACTGTTGATGTTATTGCATCTAGGCTATTTTTTTACTATTCATATAGCCATGAACTTACTGGAGATCTGGCTGAAATTCGGGGAAACCTACTTGCATTGCATCGGATTGCCACCCTTCGCCATGATGAGTTGGGTCAGGAAACCCTTCTTAATTTGCTGCTTCGCAACTATCTTCACTACAACCTATATGACCAGGCAGAGAAGTTGAGGTCAAAGGCTCCACGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTCGGGAAAATCCGGACTATTCAATTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAAGCTGCTCGTAAAGCTCCAGTTGCAGCTCGGGGTTTTCGAATTCAATGTAACAAGTGGGCTATCATAGTGCGTTTACTGTTGGGAGAGATACCTGAGCGAACCGTCTTTATGCAGAAAGGAATGGAGAAAGCGCTAAGACCTTACTTTGAGCTTACAAATGCTGTCCGTATTGGAGATTTGGAGCTGTTTAGGAACATTGCAGATAAGTTTGCAACCACCTTCAGTGCAGATGGAACTCATAATTTGATTGTTCGTCTCCGACATAATGTCATCAGGACTGGTTTACGTAACATCAGCATCTCCTATTCTCGCATCTCACTAGCTGATGTTGCTAAAAAGTTGAGGTTGGACTCGCCAAATCCTGTTGCTGATGCTGAGAGCATTGTCTCGAAGGCTATTCGTGATGGAGCAATTGATGCTACATTGGATCATGCAAATGGGTGGATGGTGTCTAAGGAAACAGGAGATATTTACTCCACAAATGAGCCTCAGCTGGCTTTCAATTCTCGAATTGCCTTCTGTCTTAACATGCACAATGAAGCTGTTAGAGCACTTCGTTTTCCACCAAACACACACAAAGAAAAAGAAAGTGCTGAGAAGAGAAGAGAGAGACAACAGCAAGAGCAGGAACTGGCCAAACATATTGCAGAGGAGGATGATGATGATTTCTGA 1473 0.4304 MTQDLEMKDRSTPSNSVSPPVPSTLQHLKEIASVIETGSYSKEVRRIARAVRLTIALRKKLTASVISSFLDHVLTPGSEPHAKLSAYLPKEDDHEMEVDAATSAIQTPIPTAKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASVAWLKNVNRRTVDVIASRLFFYYSYSHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSPNPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4296 490 Pfam Proteasome regulatory subunit C-terminal 423 489 IPR013586 GO:0000502|GO:0030234|GO:0042176
Mtr3g4296 490 SMART PINT_4 348 441 IPR000717 -
Mtr3g4296 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 490 - -
Mtr3g4296 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 1 490 - -
Mtr3g4296 490 Coils Coil 457 484 - -
Mtr3g4296 490 SUPERFAMILY "Winged helix" DNA-binding domain 349 424 IPR036390 -
Mtr3g4296 490 Pfam PCI domain 314 419 IPR000717 -
Mtr3g4296 490 MobiDBLite consensus disorder prediction 455 490 - -
Mtr3g4296 490 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
Mtr3g4296 490 Gene3D - 28 444 - -
Mtr3g4296 490 MobiDBLite consensus disorder prediction 1 22 - -
Mtr3g4296 490 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 - -
Mtr3g4296 490 MobiDBLite consensus disorder prediction 455 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4296 Mtr-Chr3 56874370 56879329 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4296 K03033 - gmx:100814379 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4296 3 56874370 56879329 Mtr3g4296 3 56874370 56879329 ECH
Mtr1g0749 1 8444650 8450075 Mtr3g4296 3 56874370 56879329 PCT