Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4293 ATGGTTACTACCAATGCACCTGATTCTTCCTCTAATTTCCCGCCAAAAAACCTCACTTCTCCGTGGGCTAAGGTTGTTCGCGGTGCTGACTCCTCCTCCTCCTCCTCCGAACCACTCAATAATCATCCGCCACATTCCGTTTCTTCATCATCGTCTCTCGATTCAGCCAATCTAGTTGCTGCTATTACTGCTGCTGTTGTTGTCGTAGATAACAACAACTCCAATGCCGATAAGATTAACAATGTGGTTAACGCTAACCCTAAAAAACCCGCTTGGAAGAACACATCCAATGGCCTCGTTGTTGCTGAGGTCAGTCCTGTAATGGGTGCTGTCTCTTGGCCTGCTTTGTCTGCTAAGCCTTCTGCTAAACTGACATCTGATTCCATCTCTGCCGTCGATGGTGCCGGATCAATCTCCATTTCTCAGGGGCCTGTTATATCAAACTCACCTCAGAAACAAGCCACTGCCACTGCTGCTAATGCAAGACATACTCCTCCAATGAATCATAGTCATAGTGTGTCTAATAGACAACAAAAACCGATGGAGCGCGGAGGAGGTAACAACAATGAGCCTGGTCCTTTGTCGAACAATTTATCTAACCCTCCTCAAGTCAATCATCAACCATCGGTTGCCCCACCATTTCCGGTGCTTCAGATCACTCCTAATACTTTCTTGGTTGACGGGGTTCAGTCGTACAAGAACAATAATGGTTGGGGTCCAAGATCACCAGCTGGGGGTTATGGGCTGCCTGTAGATGAGCACAGTCACAGGGGTAATTATGGGCACCGTCCACGTAACAATTATGGCACTAGGCGCAATCAAGATCCAGGAAATACAATGAACACTAGAGATGCTCATCCACCCCAACATAGGATGCACTCGGAGGGGTTTCTGAGGCCTACACTACCCAATTCTGCTTATTTAGGGTCTCAGCCTATGCCTATGAGACCGTTTCTAAACCCTGCAGGGTTTCATGAATTCTATTATTATCCTACACTACAATTTGAACCTTTTGGAGGTATGCCATTCTTAACCCATCCACCTCCTCCGGCGATGTTCTTTCCAGTTGCAGAAGAAACTCCTCCCACTACTCCCCCGACCAATATAATACTCAAACAAATTGATTATTACTTTAGTGATGTTAATTTGACGAATGACGAATTTCTGAAATCGAACATGGACGAACATGGTTGGGTTCCAGTTTCTTTGATTGCAAACTTCCCGCGGGTTAAAAATTTGACAAACAATATCGAGTTGATACTTGATTCATTGAGAAATTCGTCGGTTGTGGAAGTAAATGGTGACAAACTGAGGAAGCGCAAAGAGTGGGCGAGGTTTTTGTCCCCTGTTTACCAACAAGTTGGATCTAGTTCAATATCCTCTGTTTGGATCAACTTGCAAGAACATAATTGCTGA 1416 0.4513 MVTTNAPDSSSNFPPKNLTSPWAKVVRGADSSSSSSEPLNNHPPHSVSSSSSLDSANLVAAITAAVVVVDNNNSNADKINNVVNANPKKPAWKNTSNGLVVAEVSPVMGAVSWPALSAKPSAKLTSDSISAVDGAGSISISQGPVISNSPQKQATATAANARHTPPMNHSHSVSNRQQKPMERGGGNNNEPGPLSNNLSNPPQVNHQPSVAPPFPVLQITPNTFLVDGVQSYKNNNGWGPRSPAGGYGLPVDEHSHRGNYGHRPRNNYGTRRNQDPGNTMNTRDAHPPQHRMHSEGFLRPTLPNSAYLGSQPMPMRPFLNPAGFHEFYYYPTLQFEPFGGMPFLTHPPPPAMFFPVAEETPPTTPPTNIILKQIDYYFSDVNLTNDEFLKSNMDEHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSVVEVNGDKLRKRKEWARFLSPVYQQVGSSSISSVWINLQEHNC* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4293 471 PANTHER LUPUS LA PROTEIN-RELATED 31 458 IPR045180 -
Mtr3g4293 471 SMART la 364 442 IPR006630 -
Mtr3g4293 471 MobiDBLite consensus disorder prediction 266 285 - -
Mtr3g4293 471 CDD LAM 370 441 - -
Mtr3g4293 471 PRINTS Lupus La protein signature 373 390 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr3g4293 471 PRINTS Lupus La protein signature 428 441 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Mtr3g4293 471 MobiDBLite consensus disorder prediction 141 205 - -
Mtr3g4293 471 MobiDBLite consensus disorder prediction 1 18 - -
Mtr3g4293 471 MobiDBLite consensus disorder prediction 26 51 - -
Mtr3g4293 471 MobiDBLite consensus disorder prediction 141 215 - -
Mtr3g4293 471 MobiDBLite consensus disorder prediction 1 51 - -
Mtr3g4293 471 ProSiteProfiles La-type HTH domain profile. 360 449 IPR006630 -
Mtr3g4293 471 Pfam La domain 370 426 IPR006630 -
Mtr3g4293 471 Gene3D - 358 448 IPR036388 -
Mtr3g4293 471 SUPERFAMILY "Winged helix" DNA-binding domain 361 448 IPR036390 -
Mtr3g4293 471 MobiDBLite consensus disorder prediction 237 305 - -
Mtr3g4293 471 PANTHER LA-RELATED PROTEIN 1B 31 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4293 Mtr-Chr3 56861887 56865349 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4293 K18757 - gmx:100775279 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4293 3 56861887 56865349 Mtr3g4293 3 56861887 56865349 ECH
Mtr1g0742 1 8406024 8412843 Mtr3g4293 3 56861887 56865349 PCT