Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4280 ATGTCATTTGATATAGAACAATTGAGAGGTTTGTGTGAGAAAATGGAAGGTAAAGAGGTGTTAGAGCAAGCGGAAGCTCTAAGAGATGCACTGAGTTGCAAGAAAGACGCGGTTGATGAGAAAAGTAATCAACAAAATGGCTCTGTCAAGGTTAATGGAAGCAGTAATTCTCTAGCAAGCTACGTTGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATCGAGCTATTGAGAAAAGGAATACGAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACTGTCCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGATACATTTCTTGAGAAGAGGAAACCAGCTGCACAAACAATTGCATCTCCACTGACAACCAGAGAAGAATTGGAAGGAGTATCAGTACCAGCAGCAACAACAACAACTGAAAATGGTGCTGCCAAAACAACAACAGTACCAACTCCGACGACAACAACACTGACACCGATAACAACAAACAGCATCAGTTCGGAAGACTCTCAAGGAGTTTTTGAGCAAGAGGTGTGGTCTGCAGTGCAGGAAAGAGCATTAGTTCAAGCTTTAAAAACCTTTCCAAAGGAAGCTAGCCAAAGATGGGAACGGGTTGCTGCAGCTGTAACTGGGAAGATTGTTGGTCAGTGCAAGAAAAAATTCGCCATGATGAAGGAAAGTTTCAGGAACAAGAAAGCGGCTGTTTGA 777 0.4234 MSFDIEQLRGLCEKMEGKEVLEQAEALRDALSCKKDAVDEKSNQQNGSVKVNGSSNSLASYVEKKEKPWTKEEIELLRKGIRKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQTIASPLTTREELEGVSVPAATTTTENGAAKTTTVPTPTTTTLTPITTNSISSEDSQGVFEQEVWSAVQERALVQALKTFPKEASQRWERVAAAVTGKIVGQCKKKFAMMKESFRNKKAAV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4280 258 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Mtr3g4280 258 SUPERFAMILY Homeodomain-like 67 111 IPR009057 -
Mtr3g4280 258 SMART sant 198 250 IPR001005 -
Mtr3g4280 258 SMART sant 65 118 IPR001005 -
Mtr3g4280 258 Coils Coil 21 41 - -
Mtr3g4280 258 CDD SANT 202 248 IPR001005 -
Mtr3g4280 258 ProSiteProfiles Myb-like domain profile. 61 116 IPR001005 -
Mtr3g4280 258 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 255 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Mtr3g4280 258 Gene3D - 197 258 - -
Mtr3g4280 258 Gene3D - 62 119 - -
Mtr3g4280 258 CDD SANT 68 110 IPR001005 -
Mtr3g4280 258 SUPERFAMILY Homeodomain-like 200 254 IPR009057 -
Mtr3g4280 258 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4280 Mtr-Chr3 56671507 56672554 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr3g4280 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4280 K09522 - gmx:100806665 312.383