Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4278 ATGGCTGTTCCCACAAAATACCGTCTTATTACTTACTCACAAGAGCTTGTAGATGGGCAGCCCATTTTTGTTTCGTCTAATTGTCTTCCGGTTAAGGCATTGAAATATGACCCGGCAGGTCACTCTTTCCATGCTGCTGCTCTTAAACTTCTTGGTGTTACAAAAGAAGATAACAAAGATGCTGATAATAAGAAAGTGGTTGAAGATAAGGAACATGTTTATTTGCCATCTGATTCTTACAGCAGCAAGAGCAAGAAGAAATCCGGTGACGGAGACAAGCAACAAGATCATTATGCATTATTGGGTCTGAGCCATCTTAGATATCTTGCTACGGAGGATCAAATTCGTAAAAGCTATCATAAAACTTCCTTGAGGTTTCATCCGGACAAACAGGCTGCTGCTGTTCTTTCCGAGCAAACTGAAGCTGCGAAAGAGGCAAAGAAGATTGAAATAGATGTTCATTTTAAGGCAATCCAAGAGGCTTATGCGGTGTTGGTCGATCCCGTCAAAAGAAGAATTTATGATTCTACAGATGAGTTTGATGATGAGATTCCCACTGACTGTGATCCACAAGACTTCTACAAAGTGTTTGGTCCTGCTTTTATGAGGAATGGGCGGTGGTCGGTTAATCAACCAATTCCATCTCTAGGTGATGATAAGTCTTCAATAAAGGAAGTTGACAGTTTCTACAATTTTTGGTATTCCTTTAAAAGCTGGAGAGAGTTTCCCCAGGCTGATGAGTTTGATATTGAGCAAGCTGAATCCCGAGATCATAAAAGGTGGATGGAAAGGCAGAATGCAAAACTGTCGGAAAAAGCTAGGAAGGAAGAGTATGCACGTATCCGCACTCTTGTTGATAATGCTTATAAGAGGGACCCTAGAATACTTAGAAGAAAGGAAGAGGCAAAAGCTGAGAAGAAAAGGAAAAAGGAGTCCAAGTACATGGCAAAGAGGTTGGAGGAGGAAGAAGCGGCCAGAATTGCTGAAGAGGAGAAACAACGAAAAGCAGAGGAAGATAAAAAAGCTGCCGAAGCTGCTTTGCAACAGAAGAAGGTGAAAGAGAAGGAGAAAAAGCTCTTGCGGAAGGAGCGAACACGTCTTCGAACTCTCTCAAGACCTATCTTGTCACAACACATACTTGATATTGCTGAAGATGATGTAGAAGAGCTTTGCATGTCATTTGATATTGAACAATTGAGGGGTTTGTGTGAGAAAATGGAAGGCAAAGAGGTGTCTGAGCAAGTAGAAGCTCTAAGAGATGCACTGAGTTGCAAGAAAAACGTGGTTGATGAGAAAAGTAATCAACAAAATGGCTCTGTCAAGGCTAATGGAAGCAGTAGTTCTCTAGCAGGCTACATAGAGAAGAAGGAGAAACCTTGGACTAAAGAAGAGATTGAGCTATTGAGAAAAGGAATACAAAAGTTTCCCAAAGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATTGGCACTGGAAGATCTGTTGAAGAAATAATGAAAGCAACTAAAACTGTTCTCCTCCAGAAGCCCGATACAGCCAAAGCTTTTGATACATTTCTTGAGAAAAGGAAACCAGCTGCACAAACAATTGCATCCCCATTGTCAACTAGAGAAGAATTGGAAGGGGTATCAATACCAGCAACAACAACTGAAAATAGTGATGCAAAAACAACAACTACTATACCAACGCCGACGATGACGACGGCAACAATTCCAACACCGGTACCGACAGCAACAAGCAGCATCAACTCGGAAGACTCTCAAGGAGTTTCAGAACAAGAGCCGTGGTCTGCAGTGCAGGAAAGAGCGTTAGTTCAAGCTTTAAAAACCTTCCCTAAGGAAGCTAACCAGAGATGGGAACGAGTAGCTGCAGCTGTACCTGGGAAGACCGTGATCCAGTGCAAGAAAAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA 1962 0.4195 MAVPTKYRLITYSQELVDGQPIFVSSNCLPVKALKYDPAGHSFHAAALKLLGVTKEDNKDADNKKVVEDKEHVYLPSDSYSSKSKKKSGDGDKQQDHYALLGLSHLRYLATEDQIRKSYHKTSLRFHPDKQAAAVLSEQTEAAKEAKKIEIDVHFKAIQEAYAVLVDPVKRRIYDSTDEFDDEIPTDCDPQDFYKVFGPAFMRNGRWSVNQPIPSLGDDKSSIKEVDSFYNFWYSFKSWREFPQADEFDIEQAESRDHKRWMERQNAKLSEKARKEEYARIRTLVDNAYKRDPRILRRKEEAKAEKKRKKESKYMAKRLEEEEAARIAEEEKQRKAEEDKKAAEAALQQKKVKEKEKKLLRKERTRLRTLSRPILSQHILDIAEDDVEELCMSFDIEQLRGLCEKMEGKEVSEQVEALRDALSCKKNVVDEKSNQQNGSVKANGSSSSLAGYIEKKEKPWTKEEIELLRKGIQKFPKGTSRRWEVVSEYIGTGRSVEEIMKATKTVLLQKPDTAKAFDTFLEKRKPAAQTIASPLSTREELEGVSIPATTTENSDAKTTTTIPTPTMTTATIPTPVPTATSSINSEDSQGVSEQEPWSAVQERALVQALKTFPKEANQRWERVAAAVPGKTVIQCKKKFAMMKENFRNKKTAV* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4278 653 ProSiteProfiles dnaJ domain profile. 96 178 IPR001623 -
Mtr3g4278 653 ProSiteProfiles SANT domain profile. 592 647 IPR017884 -
Mtr3g4278 653 Gene3D DnaJ domain 79 197 IPR036869 -
Mtr3g4278 653 Pfam Myb-like DNA-binding domain 458 499 IPR001005 -
Mtr3g4278 653 SUPERFAMILY Chaperone J-domain 94 202 IPR036869 -
Mtr3g4278 653 SMART sant 593 645 IPR001005 -
Mtr3g4278 653 SMART sant 456 509 IPR001005 -
Mtr3g4278 653 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 4 650 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Mtr3g4278 653 ProSiteProfiles Myb-like domain profile. 452 507 IPR001005 -
Mtr3g4278 653 Pfam DnaJ domain 96 175 IPR001623 -
Mtr3g4278 653 MobiDBLite consensus disorder prediction 550 592 - -
Mtr3g4278 653 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 4 650 - -
Mtr3g4278 653 SMART dnaj_3 95 170 IPR001623 -
Mtr3g4278 653 ProSiteProfiles Myb-like domain profile. 596 643 IPR001005 -
Mtr3g4278 653 CDD DnaJ 96 167 IPR001623 -
Mtr3g4278 653 CDD SANT 459 501 IPR001005 -
Mtr3g4278 653 Gene3D - 589 653 - -
Mtr3g4278 653 Gene3D - 453 510 - -
Mtr3g4278 653 SUPERFAMILY Homeodomain-like 458 502 IPR009057 -
Mtr3g4278 653 CDD SANT 596 643 IPR001005 -
Mtr3g4278 653 PRINTS DnaJ domain signature 101 119 IPR001623 -
Mtr3g4278 653 PRINTS DnaJ domain signature 119 134 IPR001623 -
Mtr3g4278 653 PRINTS DnaJ domain signature 150 170 IPR001623 -
Mtr3g4278 653 SUPERFAMILY Homeodomain-like 595 649 IPR009057 -
Mtr3g4278 653 Coils Coil 302 365 - -
Mtr3g4278 653 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4278 Mtr-Chr3 56656925 56659758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4278 97 296 C2H2 Transcription Factor Family AT1G74250 29.167 5.87e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr3g4278 DnaJ 1e-15 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4278 K09522 - gmx:100814414 868.226