Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4262 ATGTCGACTCCAAGCGAGGATCAAATTCCTCATTTTTCTCAATTCAATTTCACTCCTTTTACTTCTTCTTCTTCTTCTATGTTTCCCTTAAGTCAAAGAAATGAAATCAATAATGTCAACTTGCACACTAGTAGTAACGTTGAAGCGTTTCCGAGTCAGAGCAACACTGTTAATCTTCCTCCACTTCTTCAAACCCAACCCAACCCAAGAGGAAAGCATAATGGTAAATCAAAAGTTTCAAAAAATTCAAAATCTGCCAATCAGATTTCAAATACAGACTCTCTGAATTCAGCCACAGTCAATCGTTATGACAGTTCCTTAGGATTGCTAACCAAGAAATTTATCAGTTTGATCAATGAGGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGATCTTAAAGGTTCAAAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGAGCCACGAGAACTGGAGCATCAAGTTAATACTCTAAAGGATGAAGTTGATAGCTTATATGCCGAGGAATTCAAACTTGACCAGTGTATAAGTGAAAGAAAGGAGCTTATAAGAAACCTGGAGGAAGGTGAAAACACTGGAAAGTACCTTTTTTTTACCAAAGAAGATATTCTTACCCTTCCATGCTTCCAGAATAAGCAACTTATTACAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCCGATCCTGATGAGGAATTAGGCTTCCACCAAAGGCAGTACAGAATGATTGTTAGAAGTGCAACTGGACCGATAAATCTGTACCTCTTGAACAAGCACGACCACAAGTTTGAGGGTGTGAGTGCCAAGCAGGCAAAGCTAGAAGATCCATCACGGAATAGCAACGGCTGCAGAATGGACGGTGTGGGATTATTAGAAAACCAAGGTTTTCAGAAAAACCCTTCTGGGAGTTTAAATTCGCTTGACTCAGAGGCTTTTGGAATTCAACAGATTACTCCTACGGATTTGGATGTTGACGGTGATTATTGGTTTCAATCAGATCCCCAAGTTGGCCTAACAGAATTGTGGCGCACAAGTGCAGTTGGCTCAGATAGATGA 1134 0.3959 MSTPSEDQIPHFSQFNFTPFTSSSSSMFPLSQRNEINNVNLHTSSNVEAFPSQSNTVNLPPLLQTQPNPRGKHNGKSKVSKNSKSANQISNTDSLNSATVNRYDSSLGLLTKKFISLINEAKDGTLDLNKTAEILKVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLEPRELEHQVNTLKDEVDSLYAEEFKLDQCISERKELIRNLEEGENTGKYLFFTKEDILTLPCFQNKQLITIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPINLYLLNKHDHKFEGVSAKQAKLEDPSRNSNGCRMDGVGLLENQGFQKNPSGSLNSLDSEAFGIQQITPTDLDVDGDYWFQSDPQVGLTELWRTSAVGSDR* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4262 377 SMART E2F_TDP_2 102 167 IPR003316 GO:0005667|GO:0006355
Mtr3g4262 377 Gene3D - 174 285 - -
Mtr3g4262 377 Gene3D - 97 169 IPR036388 -
Mtr3g4262 377 MobiDBLite consensus disorder prediction 50 73 - -
Mtr3g4262 377 PANTHER TRANSCRIPTION FACTOR E2FC 16 370 - -
Mtr3g4262 377 Pfam E2F transcription factor CC-MB domain 183 282 IPR032198 GO:0046983
Mtr3g4262 377 MobiDBLite consensus disorder prediction 50 93 - -
Mtr3g4262 377 SUPERFAMILY E2F-DP heterodimerization region 179 284 IPR037241 -
Mtr3g4262 377 Pfam E2F/DP family winged-helix DNA-binding domain 104 167 IPR003316 GO:0005667|GO:0006355
Mtr3g4262 377 SUPERFAMILY "Winged helix" DNA-binding domain 101 165 IPR036390 -
Mtr3g4262 377 Coils Coil 197 217 - -
Mtr3g4262 377 PANTHER TRANSCRIPTION FACTOR E2F 16 370 IPR015633 GO:0000978|GO:0006357
Mtr3g4262 377 CDD E2F_DD 179 285 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4262 Mtr-Chr3 56503075 56507499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4262 72 368 E2F-DP Transcription Factor Family AT1G47870 51.505 5.71e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mtr3g4262 E2F_CC-MB 8.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4262 K06620 - gmx:100797301 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4262 3 56503075 56507499 Mtr3g4262 3 56503075 56507499 ECH