Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4255 ATGGCTATAAGAAAATCAACTAAACTTCCTCAAACAGCACTCATCAAACAAATCCTTAAAAGATGTTCAAGTCTAGGCAAGAAACAACAAGGGTACGTTGATCATCATGGTCTTCGTTTGGATGTTCCAAAAGGTCACTTTGTTGTATATGTTGGTGAAAACAGAAGCAGGTACATTGTTCCTATTGCTTTTCTAAGTAGACCAGAGTTTCAAAACCTTCTTCATCAAGCAGAAGAAGAGTTTGGGTTTGATCATGACATGGGTCTTACCATTCCATGCAACCAAGATGTTTTTGAGTCTCTTACTTCAATGCTAAGATAG 321 0.3738 MAIRKSTKLPQTALIKQILKRCSSLGKKQQGYVDHHGLRLDVPKGHFVVYVGENRSRYIVPIAFLSRPEFQNLLHQAEEEFGFDHDMGLTIPCNQDVFESLTSMLR* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4255 106 Pfam Auxin responsive protein 36 105 IPR003676 GO:0009733
Mtr3g4255 106 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 106 - -
Mtr3g4255 106 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4255 Mtr-Chr3 56411568 56412405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4255 5 105 Calmodulin-binding Proteins AT4G34750 38.614 3.97e-18 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4255 K14488 - tcc:18591528 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4255 3 56411568 56412405 Mtr5g0866 5 8530328 8531223 ECH
Mtr3g4255 3 56411568 56412405 Mtr8g2421 8 34636785 34637536 ECH
Mtr3g4255 3 56411568 56412405 Mtr3g4255 3 56411568 56412405 ECH