Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4242 ATGGCGGAAGAAATTAGACAAAAGGACGACGTCGATTCATCTTCGAAATCTAAAAGCTTCTGGTCTTCACTCCGTTGGATTCCCACTTCTACCGATCATATCATCGCCGCTGAGAAACGCCTTCTTTCCATTATCAAGACTGGGTATGCTCAAGAGCATGTTAATATAGGTTCTGGTCCTCCTGGCTCTAAAGTTAGATGGTTCCGTTCAACCAGTAACGAGCCACGCTTTCTCAACACTGTTACATTTGATAGTAAACCCGATTCTCCTACACTTGTTATGGTTCATGGATACGCTGCTTCTCAGGGTTTCTTCTTTCGCAATTTTGATGCTCTCGCCTCTCGTTTCAGAATCATTGCTGTTGATCAACTTGGTTGGGGAGGATCAAGCAGACCTGATTTCACATGCAAAAGTACCGAAGAAACTGAGGCATGGTTCATTGATTCTTTCGAGGAATGGAGAAAAGCCAAAAATCTTACCAATTTCATACTGCTTGGACATTCTTTTGGTGGTTATGTTGCTTCCAAATACGCGCTCAAGCACCCTCAGCACGTACAACACTTAATTTTGGTGGGACCTGCCGGGTTTACAGAAGAAACAGATCCAAAGACTGAGTTTGTTACTAAGTTTCGAGCAACATGGAAGGGAGCAGTTCTGAACCATCTATGGGAATCTAATTTTACACCTCAGAAAATTGTCAGAGGTTTAGGTCCTTGGGGTCCTAACATGGTCCGCAAATATACAAGTGCTAGGTTTGGTACACATTCAACCGGGCAAAAACTGATTGACGAGGAATCAAGTCTGCTGACTGATTATGTTTATCATACATTGGCGGCCAAAGCTAGTGGGGAGCTGTGTTTAAAATATATTTTTGCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCAAAGTGCTCAAGAGTGGAAGGTGCCCACCACATTCATATATGGTTACGAAGATTGGATGAATTATGAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGTGAAATTATCAGGGTCCCTAAGGCCGGCCATTTTGTGTTCATTGACAACCCAAGTGGCTTCCATTCAGCTGTGTTTTATGCTTGTCGAAGGTTTCTTACCCCAAATTCGGACAATGAATCTCTTCCCGAAGGGCTATCGTCTGCTTAG 1161 0.4358 MAEEIRQKDDVDSSSKSKSFWSSLRWIPTSTDHIIAAEKRLLSIIKTGYAQEHVNIGSGPPGSKVRWFRSTSNEPRFLNTVTFDSKPDSPTLVMVHGYAASQGFFFRNFDALASRFRIIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLTNFILLGHSFGGYVASKYALKHPQHVQHLILVGPAGFTEETDPKTEFVTKFRATWKGAVLNHLWESNFTPQKIVRGLGPWGPNMVRKYTSARFGTHSTGQKLIDEESSLLTDYVYHTLAAKASGELCLKYIFAFGAFARMPLLQSAQEWKVPTTFIYGYEDWMNYEGAQEARKHMKVPCEIIRVPKAGHFVFIDNPSGFHSAVFYACRRFLTPNSDNESLPEGLSSA* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4242 386 PRINTS Epoxide hydrolase signature 115 130 IPR000639 GO:0003824
Mtr3g4242 386 PRINTS Epoxide hydrolase signature 164 177 IPR000639 GO:0003824
Mtr3g4242 386 PRINTS Epoxide hydrolase signature 178 191 IPR000639 GO:0003824
Mtr3g4242 386 PRINTS Epoxide hydrolase signature 310 326 IPR000639 GO:0003824
Mtr3g4242 386 PRINTS Epoxide hydrolase signature 343 365 IPR000639 GO:0003824
Mtr3g4242 386 PANTHER RE40534P-RELATED 16 378 - -
Mtr3g4242 386 PANTHER BNAA01G13630D PROTEIN 16 378 - -
Mtr3g4242 386 Gene3D alpha/beta hydrolase 76 367 IPR029058 -
Mtr3g4242 386 Pfam alpha/beta hydrolase fold 90 355 IPR000073 -
Mtr3g4242 386 PRINTS Alpha/beta hydrolase fold signature 115 130 IPR000073 -
Mtr3g4242 386 PRINTS Alpha/beta hydrolase fold signature 164 177 IPR000073 -
Mtr3g4242 386 PRINTS Alpha/beta hydrolase fold signature 178 191 IPR000073 -
Mtr3g4242 386 SUPERFAMILY alpha/beta-Hydrolases 80 362 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4242 Mtr-Chr3 56287566 56291752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4242 70 197 Acyl Lipid Metabolism Gene Families AT1G64670 32.117 7.01e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4242 - - gmx:100791981 694.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4242 3 56287566 56291752 Mtr3g4242 3 56287566 56291752 ECH
Mtr1g0672 1 7539733 7543978 Mtr3g4242 3 56287566 56291752 PCT