Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4237 ATGAAGATCCAGTGCGACGTCTGTAACAAACGGCAGGCTTCTTTATTCTGCACCGCCGATGAAGCTGCCTTATGCTCCACCTGCGACCACCGTGTCCACCATGCTAACAAACTCGCCTCCAAACACCGTCGCTTCTCTCTCGACCACCCTAATTCTCCCAACCATTTCCCTCTCTGCGATATTTGCCTCGAAAGAAGAGGTTTTGTTTTTTGTCAGGAAGATAGAGCGATTGTGTGCAAAGAGTGTGATTTGAAGGTTCACGGTGTCAACGAACACACCAAGAAGCATAATAGGTTTCTTCTAAGTGGGATCAAGCTGCACTCTCCTGCTCCTCCTCCCACTCTTCATGAAGAAACTGGTAATTTTACTATATCTGAGTACTTGATAAACACTATCCCAGGTTGGAAGTTTGAAGATTTCCTTGATTCCCCTTCTTCTTCTGTTCCCTCTCATGAACTACAACACCAGAATCATATAGTGCATGATGATGCTAATTATCATATTCATGAGGAAAATATTCTGGTTTCTTTCTCTAGCGAGAGCATGCGTAGGATCTGTGTTCCTCAAGCACCACTGTATTATTCTGAAAAAATGGATAACAGATCAAACACCGTCAATTTCAGCAGCAGTTTGGGGGATTTCACAGTTCCACAGATAACAATCCCTCCCAATTAA 675 0.437 MKIQCDVCNKRQASLFCTADEAALCSTCDHRVHHANKLASKHRRFSLDHPNSPNHFPLCDICLERRGFVFCQEDRAIVCKECDLKVHGVNEHTKKHNRFLLSGIKLHSPAPPPTLHEETGNFTISEYLINTIPGWKFEDFLDSPSSSVPSHELQHQNHIVHDDANYHIHEENILVSFSSESMRRICVPQAPLYYSEKMDNRSNTVNFSSSLGDFTVPQITIPPN* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4237 224 PANTHER B-BOX ZINC FINGER PROTEIN 22 119 205 - -
Mtr3g4237 224 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 109 - -
Mtr3g4237 224 Gene3D Classic Zinc Finger 1 101 - -
Mtr3g4237 224 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr3g4237 224 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mtr3g4237 224 SMART bboxneu5 54 101 IPR000315 GO:0008270
Mtr3g4237 224 CDD Bbox1_BBX-like 5 47 - -
Mtr3g4237 224 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 109 - -
Mtr3g4237 224 PANTHER B-BOX ZINC FINGER PROTEIN 21 119 205 - -
Mtr3g4237 224 CDD Bbox1_BBX-like 58 101 - -
Mtr3g4237 224 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Mtr3g4237 224 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4237 Mtr-Chr3 56242076 56242996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4237 1 151 C2C2-CO-like Transcription Factor Family AT1G75540 45.366 1.05e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr3g4237 zf-B_box 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4237 - - gmx:100794842 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4237 3 56242076 56242996 Mtr3g4237 3 56242076 56242996 ECH