Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4234 ATGGCTCGAGGAAAGATCCAGATCAAGAGAATTGAGAACACAACTAACCGACAAGTAACTTACTCAAAACGAAGGAATGGTCTTTTCAAGAAGGCTAATGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCCAGCACTGGCAAGCTTCATGAATACATTAGCCCCTCCGCCTCAACAAAGCAGTTTTTCGATCAGTATCAGATGACTGTAGGAATTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAAGATGTCAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGAATGTCTGAATGATCTGAGCATGGAAGAGCTGAGGCTACTTGAAGATGAAATGGACAAGGCTGCCAAGGCTATTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAATGAGAGAGAGGTGCACAACAGACTCCTGCGTGACTTGGATGCAAGAGCAGAAGATCCACGTTTTGAAATGATGGACAATGGAGGGGAGTATGAGTCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCTTTGAGCTTACAGCCTACTCATCCTAATCCTCATAATGGAGGAGCATCAGCTGCCTCGGATCTCACCACTTACCCTTTACTTTTTTAG 690 0.4232 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSASTKQFFDQYQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRLLRDLDARAEDPRFEMMDNGGEYESVIGFSNLGPRMFALSLQPTHPNPHNGGASAASDLTTYPLLF* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4234 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr3g4234 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr3g4234 229 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Mtr3g4234 229 Coils Coil 114 134 - -
Mtr3g4234 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Mtr3g4234 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr3g4234 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr3g4234 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr3g4234 229 Coils Coil 151 171 - -
Mtr3g4234 229 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Mtr3g4234 229 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr3g4234 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr3g4234 229 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Mtr3g4234 229 Coils Coil 77 111 - -
Mtr3g4234 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr3g4234 229 PANTHER APETALA3 1 226 - -
Mtr3g4234 229 Pfam K-box region 82 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4234 Mtr-Chr3 56218054 56222350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4234 1 228 MADS-box Gene Family AT3G54340 56.897 1.32e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr3g4234 K-box 7.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4234 K09264 - gmx:547720 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4234 3 56218054 56222350 Mtr3g4234 3 56218054 56222350 ECH