Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4207 ATGGAATCTACAAATCTCCATCATCTCCAAGACCAACCTCCTCCTCCTCCTCCTGTTTCTTCTTTATCCAGTACCCCATCCTATACAGTTGGAGGAACCACCACCACCCACTCTTGGACCCCAAACATCACTTTGAATAATGCAGGCAACATCAACTCAAATAACCTCCAAGAAGCTAATACCAGATCAAGATCATCTTTAACACACAAGAACAATTATATGAATCATGATTTAGGTTATCATCATAGTCATCAATGGACAAGTGATGTTGCTGCCGAAGAGAGCTGCTTAAACAGCAAACAGTTCAATCATAACAACAACTTAGATTCAGAGTTTTCCAAGAATAGTACTATAAAGGAAGAGATCTCATTTGCTAATTTCCCCAAATTCACTGAAATGCTTAATTACACTGCTCCTAATTCCAGCATGGAATGTTATCGAATACTTGATCCTTCCACAACAAATTCAACAGAGATGAAGAATAATAATATTGACGAGCACAAGGATATGAATGCTCTCATGCTCAAGACACTTTTTACAGGAGGAGAATTTTATAACGCTGAAAATTATCCTAACTTTGGAGACACAAGTATTCCAACTCCAAGTAGAGGCAACAATAATATTAGTAGCCAGATTCACCCGAGCATCGATATATCAAACTTGAACCATTACTCGTCTTCGTCTGCTACCACATCCTTGGATATGAACATGCAGTCATTAGATCTATTAACTAATTCATCAACATCATTTAGTGCTAATTTACAAGACCATCATCATAGTAGATTTACTACTCATGATCATGACAACCTTTCTTTTCATCTTCATCCTATGCAACACCACCACCCCACGAACATGTCCTCTTCTACTAACTCTATTCATAAGCCATCACTATTCAGCAATGGTGCGGCAGAAACAAAGAGAGGGTGCACCTTGATGGAGTCAAAGGTTTCTCAATCTCAAACGGCGTTGAAGAAATCACGATCTTCATCAGAATCACGTCCTTCATGCCCACCCTTTAAGGTTAGGAAAGAAAAATTAGGAGATAGGATTGCGGCTCTACAGCAGTTAGTGGCTCCTTTTGGAAAGACTGACACAGCATCGGTACTTATGGAAGCGATTGGATACATCAAATTCCTTCAAGGTCAAGTCGAGACACTGAGTGTTCCTTATATGAAGTCGTCCCAGAACCAAAACAATAGAGTGATTCAAGGGGGTTCAGCCAAAGGTGACACAAAGGGAGAACCAAAACAAGATCTGAGAAGTCGAGGCCTCTGTCTCGTGCCATTGTCATGCATGTCATATATAGCCGGTGATGGCAGCACTGAGGTGTGGCAACAACGCCCAAACTTTGGTGGACCAGCTTAA 1365 0.4073 MESTNLHHLQDQPPPPPPVSSLSSTPSYTVGGTTTTHSWTPNITLNNAGNINSNNLQEANTRSRSSLTHKNNYMNHDLGYHHSHQWTSDVAAEESCLNSKQFNHNNNLDSEFSKNSTIKEEISFANFPKFTEMLNYTAPNSSMECYRILDPSTTNSTEMKNNNIDEHKDMNALMLKTLFTGGEFYNAENYPNFGDTSIPTPSRGNNNISSQIHPSIDISNLNHYSSSSATTSLDMNMQSLDLLTNSSTSFSANLQDHHHSRFTTHDHDNLSFHLHPMQHHHPTNMSSSTNSIHKPSLFSNGAAETKRGCTLMESKVSQSQTALKKSRSSSESRPSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQNNRVIQGGSAKGDTKGEPKQDLRSRGLCLVPLSCMSYIAGDGSTEVWQQRPNFGGPA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4207 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Mtr3g4207 454 CDD bHLH_AtbHLH_like 339 387 IPR045239 -
Mtr3g4207 454 Gene3D - 340 403 IPR036638 GO:0046983
Mtr3g4207 454 MobiDBLite consensus disorder prediction 23 42 - -
Mtr3g4207 454 MobiDBLite consensus disorder prediction 1 42 - -
Mtr3g4207 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 214 - -
Mtr3g4207 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 210 440 - -
Mtr3g4207 454 MobiDBLite consensus disorder prediction 314 340 - -
Mtr3g4207 454 MobiDBLite consensus disorder prediction 397 419 - -
Mtr3g4207 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 393 IPR036638 GO:0046983
Mtr3g4207 454 MobiDBLite consensus disorder prediction 314 335 - -
Mtr3g4207 454 PANTHER TRANSCRIPTION FACTOR BHLH110 4 214 - -
Mtr3g4207 454 PANTHER TRANSCRIPTION FACTOR BHLH110 210 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4207 Mtr-Chr3 55928689 55933741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4207 32 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 36.522 7.59e-59 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4207 - - mtr:MTR_3g112170 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4207 3 55928689 55933741 Mtr3g4207 3 55928689 55933741 ECH