Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4177 ATGGAGGGTTCTGAATGTCAAGCAGTTGAAATTGACAAGCCCAGAGATATTTTTCTTGGTCAAGTTGTGCAGAGCAAGGATGAAGCTTATAACTTATACCAAGAACATGGCTTCAAGATGGGTTTTAGTGTAAGAAAAGGGAAGGAATTGTACTATGATAATGATAAAAAGAACACACGTTTGAAAGATTATTATTGTTCCAAACAAGGGTTTAAGAACAATGAACCAGAAGGAGAAATCGTAGGTGAAGTTGCTTATCAAAGGGCTGATTCAAGGACAAATTGTAAAGCAATGGTGCGATTTAATGTTAGCAAGGATGGAGAATGGCGAATTACTAAGTTGATAATGGATCACAACCATGCTTTGGTGCCGCTCGAGCAAAGACATTTGTTACGCTCTATGAGAAAAGTATCAGAAACCAAAGGAGGTCTCATAAAGTCTATGGTTAACGCTGGTATGAAAGTTACTCATGTTTGGAGTTATTTAGGAAAAGAGGTTGGTGGATTTGATAAGCTTGGCATGACAATGAAAGATGTGCATAATTTTGTCTACACTGAAAAGAGTAAATTAATTAAAGGTGGAGATGCCCAATCTTTAATCAATCACTTGCAAAATAGACAAGCACAAGATGCCATGTTCTACTATAGTGTGCAGTTAGACCAAGAATCACGTTTAACCAATGTGTTTTGGAGAGATGGTAAATCCAAAGTTGATTATGATTGTTTTGGAGATGTTGTGGTTTTTGATACCACTTACCGTACTAATACATATGATTTGATATGTGCTCCTTTTGTTGGGGTAAATCATCATTTGCAAAATGTTATGTTTGGTTGTGCTTTGTTATCTGATGAAACTTCTGTTTCTTTTAATTGGCTATTTAAAGTGTTTTTGGAGAGCATGGGAAATAGACAACCAAAAACATTTTTTACAGATCAAGATGGAGCCATGGCCAAAGCAATCGGAGACGTAATGCCAAATACATGTCACCGTTTATGCTTATGGCATATATCTAAGAATGCACCTTCTCATTTTGGTGATCTTAAATCTGATCAAAAGTTTCAAGGTTTGTTTTGGAAATGCATGTCAGGCTGTGATTCAAAAGAAGAGTTTGAAAGCACTTGGAGTTATATGATTAATGAGTACAAGCTTCAAAATCACAAGTGGTTGAAAAGCATGTATAAAATTCGCCATAAATGGAGCACTGCATATAGCAAGGATGTGTTCTCTGCTGATATCAAGTCATCTCAAAGAAGTGAGAGTACAAATAGTGTTTTAAGTGCGATTGCCGGAGCAACAACCAGTCTCAGTCATTTCTTATTAGCATTTGAAAAAATGGTAAACAAGTGGCGACAATTAGAGACTGAAAAGGAATTCAAAAATAGCCAAAGTATGCCTCCCCGCATCATTAATATCAGTGAGACTTTGAGACAAGCATCTATGATATACACTCACAAGACTTTCAAACTTTTTTTGAATGAGTATCTTGCTGAAACGGGTGGAAGTACTTCTAAAGACATTGGAGAATCTGATAATTTGTCATATCATGAAGTGAGTTCAAATCATATGCCTAATAAGAAACATATGGTAGTATTTGACTCCTCTGCTGCAAAGATCAGTTGTAGTTGTCGAAAGTTTGATTCAATGGGCATTCTTTGTAGTCATGCTTTGCGAATTTACAACATCAAAGGTATATTAAAAATACCTGACCAATACTTTCTGAGAAGATGGTCAAAAAAAGCAAGGGCTGTGATTTATGATCACATAGATGAGAGTTCAAAAGAAAATTCTATCTCAGAAAATGCAATGAACAATGGTGGTGATTCCATGATCCTTTATCGCAATGCTATTATGAAGTTTTTTTATAATCTAGTTTTGGATAGCCAGGAACACAAAGAAACTCAACAAATCATGTGGAAATTGGTTTATGGTGGAGTTAAGAGTGTGCACCAATGCATCAATGAGCTCAATTTGATTTCAAAAGCAACAACTAGTGAGAAAAAATTCACTCAAAATGAGGATAGTGATCACATTGCAATTTATAATCCTCGCCGCGCAAAAATTAAAGGAATGTCTAATACTCATGAAAGGGCATTTTGA 2097 0.3567 MEGSECQAVEIDKPRDIFLGQVVQSKDEAYNLYQEHGFKMGFSVRKGKELYYDNDKKNTRLKDYYCSKQGFKNNEPEGEIVGEVAYQRADSRTNCKAMVRFNVSKDGEWRITKLIMDHNHALVPLEQRHLLRSMRKVSETKGGLIKSMVNAGMKVTHVWSYLGKEVGGFDKLGMTMKDVHNFVYTEKSKLIKGGDAQSLINHLQNRQAQDAMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVVFDTTYRTNTYDLICAPFVGVNHHLQNVMFGCALLSDETSVSFNWLFKVFLESMGNRQPKTFFTDQDGAMAKAIGDVMPNTCHRLCLWHISKNAPSHFGDLKSDQKFQGLFWKCMSGCDSKEEFESTWSYMINEYKLQNHKWLKSMYKIRHKWSTAYSKDVFSADIKSSQRSESTNSVLSAIAGATTSLSHFLLAFEKMVNKWRQLETEKEFKNSQSMPPRIINISETLRQASMIYTHKTFKLFLNEYLAETGGSTSKDIGESDNLSYHEVSSNHMPNKKHMVVFDSSAAKISCSCRKFDSMGILCSHALRIYNIKGILKIPDQYFLRRWSKKARAVIYDHIDESSKENSISENAMNNGGDSMILYRNAIMKFFYNLVLDSQEHKETQQIMWKLVYGGVKSVHQCINELNLISKATTSEKKFTQNEDSDHIAIYNPRRAKIKGMSNTHERAF* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4177 698 Pfam FAR1 DNA-binding domain 32 124 IPR004330 -
Mtr3g4177 698 Pfam MULE transposase domain 245 339 IPR018289 -
Mtr3g4177 698 Pfam SWIM zinc finger 533 558 IPR007527 GO:0008270
Mtr3g4177 698 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 17 671 IPR031052 GO:0006355
Mtr3g4177 698 PANTHER OS12G0160900 PROTEIN 17 671 - -
Mtr3g4177 698 SMART 26again6 538 565 IPR006564 GO:0008270
Mtr3g4177 698 ProSiteProfiles Zinc finger SWIM-type profile. 527 563 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4177 Mtr-Chr3 55693705 55695801 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr3g4177 MULE 1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4177 - - lja:Lj4g3v2120630.1 1039.64