Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4174 ATGCCAGAACCTCAGAAAAATACTTCACCACCAATGCCACTTTCTACTACACCGCCACCGTCAAAAAAGAAGCGAAGCCTCCCTGGAATGCCAGATCCAGATGCTGAAGTAATCGCTTTATCACCCAAAACTTTACTAGCAACGAACCGTTTCATATGCGAGATCTGCAACAAAGGATTCCAACGGGAACAGAATCTCCAACTTCACCGGCGAGGACATAACATGCCGTGGAAGCTCCGGCAGCGAGCGAACGACGAAATCCTCCGTAAGAAAGTGTACGTTTGTCCTGAGCTTTCCTGCGTCCACCACAATCCTTCAAGAGCACTCGGTGACCTCACAGGAGTGAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAGAAATGGAAATGTGAACGTTGTTCTAAAAAATACGCTGCGAAATGTGATTTGAAAGTTCATATGAAGAGCTGTGGAACTAGAGAGTATAAATGTGATTGTGGCACAGTGTTTTCTAGGAAGGATAATTTTGTTACGCACAGAAGGTTCTGCGATGGAATGGTGAATGAGAGTAATAATAATAATAATAATGTTGTTGTTGTGGTTTCTACTTCTTCTTCTTCACCGGCTACGCCACCACTCACTCCATCAACAATATCATCAGTAATGGTCTCTCCTACTTTGTCGTCTACTCAGTGCTCAGAAAACCAAACAAGGCTGTCACCGTCTTCAAACGCTTCTACTTCTACTAGCTTTTGTTCTTCTTTCAGCAGTCTCATGTCAAGCTTGCCTCACTCAGATATCCCCACATCTTTCTCTATCACAGAACCCACAACCCTCTCACTTTTCACACCACTCTATCTCTCCAATAACAACAACAATGATCACCCTTTTCCCCATTACAATACTGCATCTCCACAACCTGTATTATCTGCTACTGCATTACTCCAAAAAGCTGCTCAAGTGGGTTCATCTTCATCCAATGCATCTTTGCTTCGTGCTTTAGGCTTGAAAGACAACAGTGTCAGTATTAGCAGTACCACAACAGATCAATGGAATAGCCATGGTCATGTAAAACAAGAGAATGAGCCCGTGGCAGATTACCTTGGGCTTGGACTTCCCTGCGGGAATGAGTTGAGGGGCTCATCGAACCAGCCCATGACCCGTGATCTTCTTGGTCTTAGCATGGGATTGGGTAGAGAGGATGATGATCTTTCTGCTTTGCTCACATCTTTTGGAGGGAACTTGGATTAA 1230 0.4423 MPEPQKNTSPPMPLSTTPPPSKKKRSLPGMPDPDAEVIALSPKTLLATNRFICEICNKGFQREQNLQLHRRGHNMPWKLRQRANDEILRKKVYVCPELSCVHHNPSRALGDLTGVKKHFCRKHGEKKWKCERCSKKYAAKCDLKVHMKSCGTREYKCDCGTVFSRKDNFVTHRRFCDGMVNESNNNNNNVVVVVSTSSSSPATPPLTPSTISSVMVSPTLSSTQCSENQTRLSPSSNASTSTSFCSSFSSLMSSLPHSDIPTSFSITEPTTLSLFTPLYLSNNNNNDHPFPHYNTASPQPVLSATALLQKAAQVGSSSSNASLLRALGLKDNSVSISSTTTDQWNSHGHVKQENEPVADYLGLGLPCGNELRGSSNQPMTRDLLGLSMGLGREDDDLSALLTSFGGNLD* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4174 409 Gene3D Classic Zinc Finger 51 99 - -
Mtr3g4174 409 SUPERFAMILY beta-beta-alpha zinc fingers 50 148 IPR036236 -
Mtr3g4174 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 156 IPR013087 -
Mtr3g4174 409 SMART c2h2final6 128 148 IPR013087 -
Mtr3g4174 409 SMART c2h2final6 51 73 IPR013087 -
Mtr3g4174 409 SMART c2h2final6 93 123 IPR013087 -
Mtr3g4174 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 73 IPR013087 -
Mtr3g4174 409 Pfam Zinc-finger double-stranded RNA-binding 51 73 IPR022755 -
Mtr3g4174 409 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 391 - -
Mtr3g4174 409 Gene3D Classic Zinc Finger 121 190 - -
Mtr3g4174 409 MobiDBLite consensus disorder prediction 1 34 - -
Mtr3g4174 409 MobiDBLite consensus disorder prediction 1 18 - -
Mtr3g4174 409 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 19 391 - -
Mtr3g4174 409 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4174 Mtr-Chr3 55653744 55657483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4174 11 407 IDZ Gene Family AT3G50700 47.816 4.02e-114 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr3g4174 zf-C2H2_jaz 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4174 K25869 - gmx:100818095 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4174 3 55653744 55657483 Mtr3g4174 3 55653744 55657483 ECH