Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4158 ATGATTTCTCGATTTCTTGCTCATAGAAAGAAAAATAAGGAGGACGGATTCACCATGTCCGCCCCAGGTGTACGGTTACACATTCAACAAAACTATGTGGTGATGGATAATGGCATAGTCCAAGTTACATTATCAAATCCAGATGGAATTGTCACCGGAATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAATAAAGAGACTAACAGAGGGTATTGGGATCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATTAAAGGAACATGTTTCGAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCAAAAGAACGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATTTTGCTTCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTACCCAGATGGCCAGATTTTGATATTAGTGAAACAAGGATCACTTTCAAGCTTAGGAAAGACAAGTTTCAGTACATGGCTATGGCAGACGATAGGCGAAGGATTATGCCTTTTCCGGAGGATCGGTTACCAGGAAGATGCCAACCCTTGGCCTACCAAGAAGCTGTCCTACTAGTCAATCCTAAGGATCCACAATTGAAAGGAGAGGTGGATGACAAGTATCAATATTCCTGTAAGAACATAGATAATCGAGTCCATGGCTGGATATCTTTCAATCCACCCGTAGGATTCTGGCAGATCACACCTAGCGATGAGTTTCGTTCTGGTGGGCCTCTCAAGCAGAATTTGACCTCACATGTAGGACCCACCACACTTGCGATGTTTCTTAGTGGTCACTATGCTGGACAAGATTTGGTACCCAAAATTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATACATTTATCTCAATTCTGGACCAACTGGTTATGACCCACTCTGGCTATGGGAGGATGCAAAAATAAAGATGATGACAGAAGTTCAAAGTTGGCCATACTTATTCCCCGCTTCAGAGGATTTTTTAAAACCGGATCAACGGGGCAACGTTAGTGGGAGATTACTTGTCTTAGACAGGTACATCAGCACTGACTTAATATCAGCAAATGGTGCTTATGTTGGTCTGGCTCCACCAGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACATGAATGGATTTTTTACGATTAACAATGTACGTCCAGGTGACTACAACCTTTTTGCCTGGGTGCCTGGTTTTATTGGAGACTACAGATTTGGTGATTTTGTGAAGATAACCTCAGGTTCTTACATTGAACTAGGTGAACTTGTATATGAACCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGCATTCCTGATAGATCCGCCGCAGAATTTTATGCTCCTGATCCCAATCCACAGCATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGATATACCGAATTATATCCTGATGCAGATTTAGTTTACACAATTGGTGTTAGTGACTATAGGAAGGATTGGTTTTACGCTCAGGTTCCCAGAAAAAAAGCAGATAACACTCTTGAAGGAACAACTTGGCAAATCAAGTTTGAACTAAGTGGTGTGATTCAAGGAGCTACATATAAACTCAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTCAATGATCCCAATGCAAGGCGTCCCGTATTTACCACTGGATTAATAGGAAGGGAGAACTCAATTGCAAGACTAGGAATTCATGGACTCTATTGGCTGTACCATGTGAACATACCAAGTTCTCTTCTTATTGATGGCACAAATACTATATTTTTCACACAGCCAAGATGTACCAGTCCTTTCCAGGGTTTCATGTATGACTATATTCGTTTGGAAGGTCCTCCTTGTTTTTAA 1959 0.416 MISRFLAHRKKNKEDGFTMSAPGVRLHIQQNYVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVIKGTCFEVIVQNEDQVELSFKRTWDPSLEGKFVPLNIDKRFILLRGSSGFYSYGIYEHLPRWPDFDISETRITFKLRKDKFQYMAMADDRRRIMPFPEDRLPGRCQPLAYQEAVLLVNPKDPQLKGEVDDKYQYSCKNIDNRVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKIRGGEPWKKVFGPVYIYLNSGPTGYDPLWLWEDAKIKMMTEVQSWPYLFPASEDFLKPDQRGNVSGRLLVLDRYISTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADMNGFFTINNVRPGDYNLFAWVPGFIGDYRFGDFVKITSGSYIELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQHINKLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDYRKDWFYAQVPRKKADNTLEGTTWQIKFELSGVIQGATYKLRVAIASATLAELQIRVNDPNARRPVFTTGLIGRENSIARLGIHGLYWLYHVNIPSSLLIDGTNTIFFTQPRCTSPFQGFMYDYIRLEGPPCF* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4158 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 8 651 - -
Mtr3g4158 652 CDD RGL4_C 460 647 - -
Mtr3g4158 652 Gene3D - 456 647 - -
Mtr3g4158 652 SUPERFAMILY Starch-binding domain-like 392 445 IPR013784 GO:0030246
Mtr3g4158 652 SUPERFAMILY Galactose mutarotase-like 36 311 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mtr3g4158 652 SUPERFAMILY Galactose-binding domain-like 455 647 IPR008979 -
Mtr3g4158 652 Pfam Polysaccharide lyase family 4, domain II 372 444 IPR029413 -
Mtr3g4158 652 CDD RGL4_N 24 312 - -
Mtr3g4158 652 Gene3D - 25 321 IPR014718 GO:0030246
Mtr3g4158 652 Pfam Polysaccharide lyase family 4, domain III 458 646 IPR029411 -
Mtr3g4158 652 CDD RGL4_M 349 448 IPR029413 -
Mtr3g4158 652 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 8 651 - -
Mtr3g4158 652 Gene3D - 347 443 - -
Mtr3g4158 652 Pfam Rhamnogalacturonate lyase family 24 218 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4158 Mtr-Chr3 55475459 55482387 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4158 19 650 Polysaccharide Lyase AT1G09910 71.677 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4158 K18195 - gmx:100814185 1208.74