Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4157 ATGTCTTCCCTAGGGGTGCAACTCAGCATTCAAGATCATCATGTGGTGATGGACAATGGCATACTAAGAGTCACTTTATCAAATCCCGAGGGAATTGTCACTGGAATACAGTATAGTGACATTGACAATTTGCTTGAAGTGTTGAATGAAGAATCTAATAGAGGGTATTGGGACCTCGTTTGGAGCTCACCAACAAGTACAGGAACCACCGGAAAATTTGATGTGATAAAGGCAACCACATTCAAAGTTATATTGGAAGATGAGGATCAAGTTGAGTTATCCTTCACCAGGACTTGGGATGCTTCCCTAGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCATAATGCTTCGTGGTTGTTCCGGTTTCTATTCCTATGCAATTTATGAGCACTTGGAGGACTGGCCTGCTTTTAACCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAATTCCATTATATGGCAATGGCGGATAATAGACAGAGGAATATGCCTCTTCCAGATGACAGAGTGGCACCAAGAGGCCAAGCACTTGCATATCCAGAAGCAGTTCTACTGGTCAATCCTATAGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTATCAATATTCATGTGACAACAAAGACAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCTGTTGGATTCTGGCTTATTACGCCTAGCAATGAATTTCGATCCGGTGGACCTGTCAAACAAAACTTAACTTCACACGTCGGACCAACCACACTTGCTGTGTTTCTCAGTGCTCATTATAGTGGAGAGGATTTAGTGCCTAAATTCAAAGCTGGTGAGGCATGGAAAAAAGTTTTTGGCCCAGTTTTTATCTATGTCAATTCTCCATATGATGGAAGTGACCCTATTAAACTATGGGATGATGCTAAACTGCAGATGTTAATGGAAGTTCAAAGCTGGCCCTACAATTTTCCCGAATCAGATGATTTCCCAAAATGGGACGAACGTGGTAATGTCTGTGGCAGGCTATTGGTTAAAGAGAGGTATATAGATGATGACTATTTATCAGCAAATTGTGCTTATGTTGGCTTGGCTACACCAGGAGAAGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGATGATGATGGCTATTTCTCGATTAGCAATATACATGTTGGTGACTATAATTTTTATGCATGGGTGCCTGGTTTTATTGGTGACTATAAATATGATGTAGTAATTAGCATAACAGAAGGCTGTGACATAGATATTGGTGATCTTGTTTATGAGCCACCAAGAGATGGCCCAACATTGTGGGAAATAGGCATCCCCGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCAAATATATCAACAAACTTTATGTTAATCATCCTGACAAGTTTAGGCAATATGGTATATGGGAGAGATATGCAGAACTATACCCTGACAACGATTTGATCTACACAATCGGTGTTAGTGACTTCACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGAAGATAATACATATCAAGGAACCACATGGCAAATCAAGTTTAACCTTGATAATGTAAACAGAAAAGGTAGCTATAAACTTCGAGTGGCTTTGGCATCAGCTACATATTCAGAACTTCAGGTACGAGTCAATGATCCCAAAACAAATCGCCCTTTATTTTCAAGTGGGTTGATAGGAAAGGATAACTCAATTGCTAGACATGGAATTCATGGACTTTATTGGCTTTACAATGTGAACATACCAGGTTCTTTACTTGTTGAAGGAGATAATAATACCATCTTTTTGACACAAGCTAGAGGCAATATTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCAGCTACTTCTAGTTTCAGTAAGAAAATTTGA 1935 0.3964 MSSLGVQLSIQDHHVVMDNGILRVTLSNPEGIVTGIQYSDIDNLLEVLNEESNRGYWDLVWSSPTSTGTTGKFDVIKATTFKVILEDEDQVELSFTRTWDASLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVAPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYVNSPYDGSDPIKLWDDAKLQMLMEVQSWPYNFPESDDFPKWDERGNVCGRLLVKERYIDDDYLSANCAYVGLATPGEVGSWQRECKNYQFWAKADDDGYFSISNIHVGDYNFYAWVPGFIGDYKYDVVISITEGCDIDIGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGIWERYAELYPDNDLIYTIGVSDFTKDWFFAQVTRKKEDNTYQGTTWQIKFNLDNVNRKGSYKLRVALASATYSELQVRVNDPKTNRPLFSSGLIGKDNSIARHGIHGLYWLYNVNIPGSLLVEGDNNTIFLTQARGNIPFQAIMYDYIRLEGPATSSFSKKI* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4157 644 Pfam Polysaccharide lyase family 4, domain II 358 429 IPR029413 -
Mtr3g4157 644 Gene3D - 4 311 IPR014718 GO:0030246
Mtr3g4157 644 SUPERFAMILY Galactose-binding domain-like 440 633 IPR008979 -
Mtr3g4157 644 Gene3D - 441 633 - -
Mtr3g4157 644 Pfam Polysaccharide lyase family 4, domain III 443 632 IPR029411 -
Mtr3g4157 644 SUPERFAMILY Galactose mutarotase-like 11 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mtr3g4157 644 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Mtr3g4157 644 CDD RGL4_N 8 294 - -
Mtr3g4157 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 638 - -
Mtr3g4157 644 Gene3D - 334 427 - -
Mtr3g4157 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 638 - -
Mtr3g4157 644 CDD RGL4_M 334 433 IPR029413 -
Mtr3g4157 644 CDD RGL4_C 445 633 - -
Mtr3g4157 644 SUPERFAMILY Starch-binding domain-like 370 429 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4157 Mtr-Chr3 55468968 55474068 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4157 1 636 Polysaccharide Lyase AT1G09890 70.376 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4157 K18195 - gmx:100793563 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4157 3 55468968 55474068 Mtr3g4157 3 55468968 55474068 ECH