Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4155 ATGGACTTCCACAATCTTTTCCTGTTTTTGATGTTACAATTCATCCTGGTTCTTGGGGTGCGATTGGATATTCAAGAAAACTATGTGGTAATTGATAATGACATAGTACAAGTCAATATATCAAACCCAGAAGGATGTGTTACTGGAATTCAATATAATGGACTCGATAATTTGCTCGAAATTAATAACCACGAATCTGATAGAGGGTATTGGGATATTGTTTGGGATCAAGGTGGGGAAAAAAGAACAAAAAAAGGTGCAAAGGGAAAGGGTAAATTGGACAGGCTGGAAACGACAAATATGAGGGTGATAATGGAAAGTGAAGAACAAGTAGAGCTATCTTTCACTAGAACATGGAATTTATCTCTTGAAGGAAAGCTTGCGCCACTCAATATTGATAAAAGGTTTATAATGCTTCGTGGTTCATCCGGATTCTACACGTATGCCATTTACGATCATTTGAAGGAATGGCCTGCCTTTGATCTTGACAATACTAGGGTTGCTTTCAAGCTTAGGAAAGACAAGTTCAATTACATGGCTATAGCTGACAATAGACAAAGATTTATGCCTCTACCTGATGATCGTTTACCTCCTAGAGGCCAAGTTTTGGCTTACCCAGAGGCTGTCCGCCTTGTCAATCCGGTGGAGCCAGAGTTCAAAGGAGAGGTGGATGATAAGTATGAGTACGCATGTGAGAGTCGAAGTAACCAAGTTCATGGTTGGATTTCCATTGATTCATCATCAGATTCCACTGGATGCTGGCTAATTACGCCTAGCTATGAGTTCAGATCTGCTGGGCCCTTAAAACAATATCTTGGTTCTCACCTGGGCCCCACCATGCTCTCTGTATTTCATAGCACACATTATTCAGGGGCAGATCTTATCATGAAATTTGGAGAAAATGAACCATGGAAGAAAGTCTTTGGTCCAATATTCATATACCTTAATTCCAACTCTGATGGTTTTAGCCCAATCAAGCTTTGGGAGGACGCCAAACAACAGATGGTGAATGAAGTTGAAAGCTGGCCCTATACTTTTCCTGCTTCTGAGGACTTCCTCTCATCTGCCCAACGAGGTAAATTTGAAGGTAGATTGCTTGTCCGAGATAGGGATGCATTCGTCCCAGTCAGTGGTGCTTATGTGGGATTAGCAGCCCCAGGAGATGTTGGATCTTGGCAAAGAGAATACAAGGGCTATCAATTTTGGACCATTACCGATGATAAAGGCTATTTCTCAATAATTAATGTACTTCCTGGTGACTATAATTTGTATTCGTGGGTCAATGGATTCATCGGTGATTATCAATGTAACAATATCATTAACATAACCTCGGGTTCTGAAATTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGACATGGCCCTACACTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCCTTGTACGTGAACAGACTTTATGTCAACCATTCAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGATCTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGATTACAAAAAAGATTGGTTTTTTGCTCAGGTCACCAGGAAGAAAGACAACAACACTTACCAAGGAACCACATGGCGAATTAATTTCAATCTTGATTCAGTGAATACAAAAGGAACCTACAAATTGCGACTAGCTTTGGCATCTGTACATTATGCGGAGCTACAGATTCGCATAAACAATTTAGATGCAACAAGTCCGCCTTTATTTTCAACTGGGGTTATTGGAAAGGAGAATACAATAGCAAGGCATGGAATTCACGGGCTGTACTGGTTATACAACATTGATGTACAAGGCAGTCTTCTTGTGAAGGGGAACAATACCATCTTTCTAACGCAAGCTACCAAGGATGGTCCTTTTGTAGGAATTTTATATGATTATATTCGTTTAGAAGGACCTCCAACTTAA 1974 0.4073 MDFHNLFLFLMLQFILVLGVRLDIQENYVVIDNDIVQVNISNPEGCVTGIQYNGLDNLLEINNHESDRGYWDIVWDQGGEKRTKKGAKGKGKLDRLETTNMRVIMESEEQVELSFTRTWNLSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYDHLKEWPAFDLDNTRVAFKLRKDKFNYMAIADNRQRFMPLPDDRLPPRGQVLAYPEAVRLVNPVEPEFKGEVDDKYEYACESRSNQVHGWISIDSSSDSTGCWLITPSYEFRSAGPLKQYLGSHLGPTMLSVFHSTHYSGADLIMKFGENEPWKKVFGPIFIYLNSNSDGFSPIKLWEDAKQQMVNEVESWPYTFPASEDFLSSAQRGKFEGRLLVRDRDAFVPVSGAYVGLAAPGDVGSWQREYKGYQFWTITDDKGYFSIINVLPGDYNLYSWVNGFIGDYQCNNIINITSGSEINVGELVYEPPRHGPTLWEIGIPDRSAAEFYVPDPNPLYVNRLYVNHSDRFRQYGLWERYADLYPNEDLVYTVGISDYKKDWFFAQVTRKKDNNTYQGTTWRINFNLDSVNTKGTYKLRLALASVHYAELQIRINNLDATSPPLFSTGVIGKENTIARHGIHGLYWLYNIDVQGSLLVKGNNTIFLTQATKDGPFVGILYDYIRLEGPPT* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4155 657 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 655 - -
Mtr3g4155 657 SUPERFAMILY Galactose-binding domain-like 461 653 IPR008979 -
Mtr3g4155 657 Pfam Polysaccharide lyase family 4, domain III 463 652 IPR029411 -
Mtr3g4155 657 Gene3D - 461 653 - -
Mtr3g4155 657 Gene3D - 354 451 - -
Mtr3g4155 657 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 655 - -
Mtr3g4155 657 SUPERFAMILY Galactose mutarotase-like 27 319 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mtr3g4155 657 Pfam Polysaccharide lyase family 4, domain II 377 449 IPR029413 -
Mtr3g4155 657 Gene3D - 21 309 IPR014718 GO:0030246
Mtr3g4155 657 Pfam Rhamnogalacturonate lyase family 24 223 IPR010325 -
Mtr3g4155 657 SUPERFAMILY Starch-binding domain-like 355 451 IPR013784 GO:0030246
Mtr3g4155 657 CDD RGL4_N 27 320 - -
Mtr3g4155 657 CDD RGL4_M 357 453 IPR029413 -
Mtr3g4155 657 CDD RGL4_C 465 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4155 Mtr-Chr3 55454284 55458970 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4155 20 655 Polysaccharide Lyase AT1G09890 61.562 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4155 K18195 - gmx:100786488 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4155 3 55454284 55458970 Mtr3g4155 3 55454284 55458970 ECH