Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4151 ATGGAGTTCTATGATGGAGATTTCATGGAGGAATTAATGGCTCTAAGAAGAGAAACATATGAAATTACCAATCCAAGTCAAGAAGAAAATCAATTCTTCTCATCAACAAGTAACTTGAGTTTTGATAACTGTTTTGAACAAAACTCTTTACCATATCTACCAAACTCTTCTTGTACTCAACAAGTTCCTCAAAGCTATAACAACAATGATCACTACAGTAACACTTTCAATGAAATCTATGGTTCCTTACTTGATGAATCTTCAACACCACCACAGATTCTTGATTCGTACTATAATAATAGTATTGACACTCCATTTATTTCTCAAGAAGACTTTTCACTGTCCATGATGGGAGAAGAAGATCAAGGTTTGCTTGATGATGAGCTTCAGAATTTGGAGCTGCAAACAACATGTAAAATGGAGCCAATACAATCACCTGAAATGCCAGTAGTTTTCAACACTGGTAATGGTATGGAAAGAAAGAACCGATCGAAGAAACTTCAAGGACAACCGTCGAAGAATCTAATGGCTGAAAGGAGAAGACGAAAGAGATTAAACGACCGTCTTTCGATGCTACGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTCTAGAGAAAATAAAAAATCTGCAACAAGAAATTGAACTAGATTCAAATATGACAAGCATTGTCAAAGATGTCAAACCAAATGAAATCTTAATCAGAAATTCTCCTAAGTTTGAGGTGGAGAGGAGCGCGGACACAAGGGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTGTTGCTATCCACAGTAAACACATTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGAAAAGGGAAATGCTAAGTTCTGAAGATATTAAGCAAGCCTTATTCAGAAGTGCAGGGTATGGAGGAAGATGTTTGTGA 1014 0.3718 MEFYDGDFMEELMALRRETYEITNPSQEENQFFSSTSNLSFDNCFEQNSLPYLPNSSCTQQVPQSYNNNDHYSNTFNEIYGSLLDESSTPPQILDSYYNNSIDTPFISQEDFSLSMMGEEDQGLLDDELQNLELQTTCKMEPIQSPEMPVVFNTGNGMERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKIKNLQQEIELDSNMTSIVKDVKPNEILIRNSPKFEVERSADTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEKREMLSSEDIKQALFRSAGYGGRCL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4151 337 SMART finulus 175 224 IPR011598 GO:0046983
Mtr3g4151 337 MobiDBLite consensus disorder prediction 155 175 - -
Mtr3g4151 337 Gene3D - 157 234 IPR036638 GO:0046983
Mtr3g4151 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 337 - -
Mtr3g4151 337 Pfam Helix-loop-helix DNA-binding domain 175 218 IPR011598 GO:0046983
Mtr3g4151 337 PANTHER DNA BINDING PROTEIN 3 337 - -
Mtr3g4151 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 231 IPR036638 GO:0046983
Mtr3g4151 337 CDD ACT_UUR-ACR-like 263 304 - -
Mtr3g4151 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Mtr3g4151 337 Coils Coil 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4151 Mtr-Chr3 55409552 55411460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4151 160 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.835 4.75e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr3g4151 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4151 - - cam:101489960 524.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4151 3 55409552 55411460 Mtr3g4151 3 55409552 55411460 ECH