Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4150 ATGAAAATGGGTACTGGTTGGAGAAGAGCCTTTTGTACACGAGACCCTGAATCTACCATATCAGATAATAAGAACAACAACAACGGAAGTCCAAATCCTAGTCCAAGAAGCTGTGCTAGATTGAGTTTTCTTTCTGGTGGTAGTAGTAATCCTTCAACTCCACGTTTGCACCAATCTAAATCTCAACCAGTTTCTAGTCCAAGTCTTCGTTGTCGAACAATAACTGAAGCAGCTTCTCAAATAACAAATGATAGCCCCAGATTTCAAAGTAGCACCCCAAGATCAACAAAATCCCCTAGAGTTAACTCAATATCAAATCCTACTTCTCCTCGCTCTCCTTTGAAGTTGTCCCTCTTCAAAAACAGCTTCAAATTCAGGAGTAGCTGTGGAATCTGTTTGAATAGCGTGAAAACGGGGCAGGGGAAGGCAATATACACAGCAGAATGTGCACATGCTTTTCATTTCCCTTGCATAGCAGCACATGTACGCAACCATGCTACCCTTGTTTGCCCTGTCTGCAACGCCACATGGAAAGACGTTCCTCTTCTAGCGGCGCACAAGAATCTTGCTTCTTCACAACAAATTCCCAATGCAATTCCAAACCACAAAATACCTACAGTAAATCCCTCTCCTGTTATCAGAACCAAGAACGTGGATCACTCTCAACAACAGCAACAAACAAAGCCTTCTGAATCAACAAGATCCTACGACGATGATGAGCCTCTCCTCCTTTCTCCAACTTCTGGTGGTGGAAGGATTAACACTATTCCCGAAGCAGATGAAAATGCAGAGGAAGAAGATGATGACAACTGCGAGTTTCAAGGATTTTTCGTAAACACTAAACCTACATCCACCGCTAACAAAACCTACTCCGATTACATTCAAACCAACGACGGAGTCGGTGATTCAAGAACTGTTCAGGTGAAGTTAATGCCAGAATGTGCAATTGTATCAGTTTCCAGAACACACGAAACATACGCTTTGGTTTTGAAAGTAAAAGCACCACCACCACTCCGCGGCGGAACCAACACACTTGATCCTTCACGGCGAGCTCCGATAGATCTTGTTACAGTTCTCGATGTTGGTGGAAGCATGTCCAGCGCAAAGCTTCACATGCTAAAACGCGCGATGCGTTTGGTTATTTCATCTCTTGGTCCTTCTGATAGGCTTTCTATTGTTGCTTTTTCGTCTATTTCCAAACGACTCTTACCGTTGAGAAGAATGACGGCTCAAGGTCAACGTTTGGCTCGGCGCATCGTTGACCGGCTTGTTACCGGTGAAGGTAACAGCGTTAGTGAAGCTTTGAGAAAAGCAACTACAGTTTTGGAGGATCGTAGAGAAAGAAACCCGGTTGCTAGCGTCATGCTATTATCCGACGGTCAAGATGAAAAGGTTAACAATAGTAAGAATCAAAATCAACGGAAGATGTATAACCACGCTTCTTCAACCCGGTTCGCTCATATTGAAATTCCGGTTCACGCGTTTGGGTTTGGTAGCAAAAGCGGTTATAGTCATGAACCGGGTGAGGATGCATTTGCAAAATGTGTTGGCGGTCTTTTGAGTGTTGTGGTTCAGGATTTAAGAGTTCAACTTGGCTTTCAATCTGATTCGGCCCGGGCCGAGATTAATGCTATATACTCTTGCAGTGGAAGGCCCACGCTGTTGAGCTTAGGAGCCGTACGGCTCGGCGATTTATACGCTGAAGAAGAAAGAGAGCTTTTGGTGGAGATGAGAGTTCCAGCGTCAGCTTTGGGGTATGGGACCCACCATGTGATGACGGTAAGGTGTCTTTATAAAGACCCCGCAAGTCAAGAGATAGTATACGGCAGAGAACAGGGACTTACAGTGCAACTACCTCAGAATCAATCTCAGAATATACGATCATCAGGAACAAGAATCGAACGGTTGAGGAATCTTTTCATAACAACACGAGCCATAGCTGAGTCGAGGAGGCTTTTAGATCATAACAGTGACTTCACAAGTGCTCATCATTTACTTGCTTCAGCTCGTTCTCTTTTGATACAATCTGGCTCGGCTTCAGCGGAGCAATATGTTCGTGGCTTGGAAGCTGAGCTAGCGGAGCTTCATTGGAGGAGACAACAAGAACAGGTTCAAGTTGAGGTTCAGCAGCAACAAATGATGATTCAAAGAAGAAGAGGGTGCGAAAATATGGTGGATGAAAACGGTGAGCCACTTACCCCTACATCAGCTTGGAGAGCGGCTGAGAAGCTGGCTAAGATGGCTATGGTCAAGAAGTCTTTGAATAAAGTCAGTGACTTACATGGTTTCGAAAATGCTAGGTTTTAA 2307 0.4456 MKMGTGWRRAFCTRDPESTISDNKNNNNGSPNPSPRSCARLSFLSGGSSNPSTPRLHQSKSQPVSSPSLRCRTITEAASQITNDSPRFQSSTPRSTKSPRVNSISNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGKAIYTAECAHAFHFPCIAAHVRNHATLVCPVCNATWKDVPLLAAHKNLASSQQIPNAIPNHKIPTVNPSPVIRTKNVDHSQQQQQTKPSESTRSYDDDEPLLLSPTSGGGRINTIPEADENAEEEDDDNCEFQGFFVNTKPTSTANKTYSDYIQTNDGVGDSRTVQVKLMPECAIVSVSRTHETYALVLKVKAPPPLRGGTNTLDPSRRAPIDLVTVLDVGGSMSSAKLHMLKRAMRLVISSLGPSDRLSIVAFSSISKRLLPLRRMTAQGQRLARRIVDRLVTGEGNSVSEALRKATTVLEDRRERNPVASVMLLSDGQDEKVNNSKNQNQRKMYNHASSTRFAHIEIPVHAFGFGSKSGYSHEPGEDAFAKCVGGLLSVVVQDLRVQLGFQSDSARAEINAIYSCSGRPTLLSLGAVRLGDLYAEEERELLVEMRVPASALGYGTHHVMTVRCLYKDPASQEIVYGREQGLTVQLPQNQSQNIRSSGTRIERLRNLFITTRAIAESRRLLDHNSDFTSAHHLLASARSLLIQSGSASAEQYVRGLEAELAELHWRRQQEQVQVEVQQQQMMIQRRRGCENMVDENGEPLTPTSAWRAAEKLAKMAMVKKSLNKVSDLHGFENARF* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4150 768 ProSiteProfiles VWFA domain profile. 354 499 IPR002035 -
Mtr3g4150 768 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 5 768 - -
Mtr3g4150 768 ProSiteProfiles Zinc finger RING-type profile. 129 174 IPR001841 -
Mtr3g4150 768 MobiDBLite consensus disorder prediction 194 267 - -
Mtr3g4150 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 246 IPR013083 -
Mtr3g4150 768 MobiDBLite consensus disorder prediction 1 112 - -
Mtr3g4150 768 CDD vWA_C3HC4_type 353 524 - -
Mtr3g4150 768 Pfam RING-like zinc finger 129 158 IPR001841 -
Mtr3g4150 768 CDD RING-H2 129 174 - -
Mtr3g4150 768 Pfam von Willebrand factor type A domain 354 498 IPR002035 -
Mtr3g4150 768 SMART ring_2 129 173 IPR001841 -
Mtr3g4150 768 SUPERFAMILY RING/U-box 123 179 - -
Mtr3g4150 768 MobiDBLite consensus disorder prediction 16 112 - -
Mtr3g4150 768 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 5 768 - -
Mtr3g4150 768 Gene3D von Willebrand factor, type A domain 354 518 IPR036465 -
Mtr3g4150 768 SMART VWA_4 352 539 IPR002035 -
Mtr3g4150 768 MobiDBLite consensus disorder prediction 194 231 - -
Mtr3g4150 768 SUPERFAMILY vWA-like 352 527 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4150 Mtr-Chr3 55373395 55376436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4150 121 269 C3H Transcription Factor Family AT3G03550 30.128 8.65e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4150 - - lja:Lj3g3v3131860.1 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4150 3 55373395 55376436 Mtr3g4150 3 55373395 55376436 ECH