Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4116 ATGTCCAAACTACCCCTTTCCATATCAAAATTCCCATTTTCTATCTTCTTCCTTCTAACCTTCATAATACCCTTCAAAGTAATTTCACAAACCACAACCACCGAACAAACAATCCTTCTCAATCTTAAACGTCAACTTAATAATCCACCGTCGCTTGAATCATGGAAACCGTCGCTATCTTCGCCGTGCAATTGGCCGGAGATCAATTGCACCGGCGGCACTGTGACGGAGCTTCTCCTCTTAAACAAAAACATCACCACACAGAAACTCCCTTCCATAATCTGCAACCTCAAAAACCTCATCAAGCTTGATCTCTCCAATAACTCCATCGCCGGCGATTTTCCGACGTGGCTGCAAAACTGCTCCAATCTCCGGTATCTTGATCTCTCCCAAAACTACTTCGCCGGTCAAATCCCTAATGACATCAGCAAACTCAAATCACTCACTTACTTCAACCTCGGCGGTAACAGCTTCACCGGCGATATCCCGGCGGCGATCGGAAAACTTCAAATTCTTCAAACACTTCACCTCTTTCAAAACAATTTCAACGGAACATTCCCGAAGGAAATCGGAGACTTATCCAATCTCGAAATTCTCGGCTTAGCTTATAACTATAGGCTCAAACCAATGGAGATTCCGATTGAATTTGGAAATTTGAAGAGCTTGAAATTCATGTGGATTTCACAGTGTAACTTGATCGGAAACATTCCAGAAAGTTTCGAGAATCTCACGAATCTCGAACAGTTGGATTTATCAATGAACAATTTAACAGGAAATATACCTACAAACTTGTTATCGCTGAAGAACTTAAATTCCTTGTTCCTTTTCCGTAATAGGTTATTTGGTGTGATACCTAATTCGGTTCAGGCTTTGAATTTGACACATATAGACTTGGCAATGAACAATTTAACTGGTGCTATACCAGAAGAATTTGGTAAGTTGCAGAATTTGATGTTTCTGCACTTATATTCAAATCAGTTATCTGGTGAGATTCCTAGAAGTTTAGGGTTAATTCCAAATTTGAGGAATTTTAGGGTTTTTGATAATAAGCTGAATGGAACCTTGCCTTCAGAATTAGGAAGGTATTCAAAGCTTGTGGCTTTTGAAGTTTCTGAAAATCAACTAGTTGGTGGGTTGCCAGAACATTTATGTAATGGTGGTGCTTTGTTGGGTGTGATTGCTTTTTCAAATAATCTCAGTGGAAACTTGCCAAAATCGTTTGATAAATGTGGTTCTGTTACCACTATTCAACTTTACAAGAACAGTTTTTTAGGGGAAGTTCCTTTGAGTTTGTGGAATTTGACAAAATTATCAACATTGATGTTAAGTGATAACTTGTTTTCTGGTAAACTTCCAAGTAAATTATCATGGAACATGTCAAGACTTGAGATTAGAAACAACAACTTTTCAGGTCAGATATCTGTTGGAGTTTCTTCTGCTTTAAATTTGGTAGTTTTTGATGCAAGAAACAACACCTTCTCTGGTGAGTTTCCAAGGGAATTAACGGGTTTATTGCAGCTCACTACGCTCATGCTTGATGGTAATCAACTCTCCGGAACACTTCCATCGGAGATAATATCGTGGCAATCGTTGAATACTCTAACAATCTCCAGAAACAAAATTTCAGGTCAAATACCCATTGCCATGTCTTCTCTTCCTAACCTAGTTTACTTGGATTTGTCTGAGAATAACATAACTGGTGAAATCCCAGCTCAGCTTGTGAAATTGAAGTTTATTTTTCTCAACTTGTCCTCCAACAAGCTAACAGGGAACATCCCTGATGATTTTGACAACCTTGCATATGAAAATAGTTTTTTGAACAATCCTCAACTATGTGCTCATAAGAACAACCTTTCAAGCTGCTTGACAAAAACCACACCACGCACTAGGAGCAATTCATCTTCGAAAACGAAAGTCCTTGTTGTGATTCTTGCTGTTGCAGTCATTGCGTTGTTGGGCGCAGCTTCTTTGGCCTTCTGCACTTTGAAAAAGCACTGCGGCAAAAAGCCTGTCAGGCGTAAGCTTTCAACATGGAGGCTTACCTCATTCCAGAGGCTTGATCTCACAGAAATAAATATATTCTCAAGTTTGACAGAGAATAACCTCATAGGAAGTGGAGGGTTTGGGAAAGTTTATCGGATAGCTTCAACTCGTCCTGGTGAGTACATTGCAGTAAAGAAGATTTGGAATGTCAAAGATGTGGATGACAAACTGGATAAAGAATTTATGGCTGAGGTTGAAATCTTGGGCAATATTAGGCATTCCAATATAGTGAAGCTTTTGTGTTGTTATTCAAGTGAAAGCTCCAAACTTCTTGTTTATGAATACATGGAAAATCTTAGCCTGGATAAGTGGCTGCATAAAAAGAAGATGAAAACGTCAGTTTCTGGGTTGAGTTCACACACCGAGAATCAACTAGTGTTGAGTTGGCCAACGAGATTGAACATAGCCATTGGTGCTGCACAAGGCTTGTGTTACATGCACCATGAATGTTCAATGCCAATCATTCACAGAGATGTCAAGTCTAGCAATATACTGCTTGACTCTGAGTTCAAGGCGTGTATAGCAGATTTTGGGCTCGCCAAGTTGTTGGTGAAGAATGGGGAACCATACACCGCATCTGTTCTAGCAGGGTCTTTCGGCTATATTCCACCAGAATATGCATATTCAACCAGGATTGATGAGAAAGTTGATGTGTACAGCTTTGGAGTTGTGCTCCTGGAGCTAGTGACAGGAAGAGAGCCTAATTATGGAGGTGAGAATGCATGCAGTCTGGTTGATTGGGCATGGCAGCATTGTAATGAAGGGAAATGCGTCACTGATGCATTTGATGAGGTTATGAGAGAAACACGTTATGCAGAAGAGATGACTAAGGTCTTCAAATTAGGCCTCATGTGCACAAGCACATTACCCTCCACTAGACCTTCCACAAAGGAGATTTTGCAAGTTCTTCGTCAGTGTTGTTCTTCAAGTTCTACACGTAAAAGAATGTCAATTGAGGTTGATATCACTCCTCTTCTTGGCAATACAACTTACATTTCCAGTTATAAGGATAGTAGGACTGGAAGTGAAAACGAAGAAAGTTGCTTATATAGTGTGTAA 3102 0.3994 MSKLPLSISKFPFSIFFLLTFIIPFKVISQTTTTEQTILLNLKRQLNNPPSLESWKPSLSSPCNWPEINCTGGTVTELLLLNKNITTQKLPSIICNLKNLIKLDLSNNSIAGDFPTWLQNCSNLRYLDLSQNYFAGQIPNDISKLKSLTYFNLGGNSFTGDIPAAIGKLQILQTLHLFQNNFNGTFPKEIGDLSNLEILGLAYNYRLKPMEIPIEFGNLKSLKFMWISQCNLIGNIPESFENLTNLEQLDLSMNNLTGNIPTNLLSLKNLNSLFLFRNRLFGVIPNSVQALNLTHIDLAMNNLTGAIPEEFGKLQNLMFLHLYSNQLSGEIPRSLGLIPNLRNFRVFDNKLNGTLPSELGRYSKLVAFEVSENQLVGGLPEHLCNGGALLGVIAFSNNLSGNLPKSFDKCGSVTTIQLYKNSFLGEVPLSLWNLTKLSTLMLSDNLFSGKLPSKLSWNMSRLEIRNNNFSGQISVGVSSALNLVVFDARNNTFSGEFPRELTGLLQLTTLMLDGNQLSGTLPSEIISWQSLNTLTISRNKISGQIPIAMSSLPNLVYLDLSENNITGEIPAQLVKLKFIFLNLSSNKLTGNIPDDFDNLAYENSFLNNPQLCAHKNNLSSCLTKTTPRTRSNSSSKTKVLVVILAVAVIALLGAASLAFCTLKKHCGKKPVRRKLSTWRLTSFQRLDLTEINIFSSLTENNLIGSGGFGKVYRIASTRPGEYIAVKKIWNVKDVDDKLDKEFMAEVEILGNIRHSNIVKLLCCYSSESSKLLVYEYMENLSLDKWLHKKKMKTSVSGLSSHTENQLVLSWPTRLNIAIGAAQGLCYMHHECSMPIIHRDVKSSNILLDSEFKACIADFGLAKLLVKNGEPYTASVLAGSFGYIPPEYAYSTRIDEKVDVYSFGVVLLELVTGREPNYGGENACSLVDWAWQHCNEGKCVTDAFDEVMRETRYAEEMTKVFKLGLMCTSTLPSTRPSTKEILQVLRQCCSSSSTRKRMSIEVDITPLLGNTTYISSYKDSRTGSENEESCLYSV* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4116 1033 Pfam Leucine rich repeat N-terminal domain 37 70 IPR013210 -
Mtr3g4116 1033 SMART LRR_typ_2 552 576 IPR003591 -
Mtr3g4116 1033 SMART LRR_typ_2 504 528 IPR003591 -
Mtr3g4116 1033 SMART LRR_typ_2 314 338 IPR003591 -
Mtr3g4116 1033 SMART LRR_typ_2 434 458 IPR003591 -
Mtr3g4116 1033 SMART LRR_typ_2 145 169 IPR003591 -
Mtr3g4116 1033 SMART LRR_typ_2 97 120 IPR003591 -
Mtr3g4116 1033 SMART LRR_typ_2 243 267 IPR003591 -
Mtr3g4116 1033 SUPERFAMILY Protein kinase-like (PK-like) 691 984 IPR011009 -
Mtr3g4116 1033 ProSitePatterns Protein kinases ATP-binding region signature. 703 727 IPR017441 GO:0005524
Mtr3g4116 1033 Pfam Leucine rich repeat 99 157 IPR001611 GO:0005515
Mtr3g4116 1033 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Mtr3g4116 1033 SMART serkin_6 697 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4116 1033 ProSiteProfiles Protein kinase domain profile. 697 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4116 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Mtr3g4116 1033 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 1000 - -
Mtr3g4116 1033 SUPERFAMILY RNI-like 292 600 - -
Mtr3g4116 1033 Gene3D Transferase(Phosphotransferase) domain 1 777 1004 - -
Mtr3g4116 1033 Pfam Protein kinase domain 699 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr3g4116 1033 ProSiteProfiles Leucine-rich repeat profile. 245 268 IPR001611 GO:0005515
Mtr3g4116 1033 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 16 1000 - -
Mtr3g4116 1033 Gene3D Phosphorylase Kinase; domain 1 679 776 - -
Mtr3g4116 1033 Gene3D Ribonuclease Inhibitor 185 290 IPR032675 -
Mtr3g4116 1033 Gene3D Ribonuclease Inhibitor 291 388 IPR032675 -
Mtr3g4116 1033 Gene3D Ribonuclease Inhibitor 32 184 IPR032675 -
Mtr3g4116 1033 SUPERFAMILY L domain-like 43 380 - -
Mtr3g4116 1033 ProSiteProfiles Leucine-rich repeat profile. 554 577 IPR001611 GO:0005515
Mtr3g4116 1033 Gene3D Ribonuclease Inhibitor 389 622 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4116 Mtr-Chr3 54943218 54946892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4116 23 1007 Receptor kinase-like Gene Family AT5G25930 54.555 0.0 1029
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr3g4116 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4116 K00924 - adu:107461025 1384.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4116 3 54943218 54946892 Mtr3g4116 3 54943218 54946892 ECH