Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4096 ATGATGGCAGTGAGTTCAGGGTGCAAAGATGGTAGCAAGATAGCAATGGACAATGGAAAGTACGTAAGGTACACACCAGAACAAGTGGAAGCACTTGAAAGACTCTACCATGAATGTCCAAAACCAACTTCTCTTCGAAGACAACAACTCATTAGAGAGTGTCCTATTCTCTCTCATATTGAACCTAAACAGATCAAAGTTTGGTTCCAGAACAGAAGGTGCAGAGAGAAGCAGAGGAAAGAAGCTGGAAGGTTACAAGCTGTGAACAGGAAGTTAACAGCAATGAACAAACTGCTTATGGAGGAAAATGATAGATTGCAGAAACAAGTGTCACACCTTGTCTATGAGAACACGTTTTTCCGCCAACATACACAAAATACGACCCTTGCCACTACAGACACGAGTTGTGAGTCAGTGGTAACAAGCGGTCAGCAGCATCCACAACCAAGGGATGCAAGCCCTGCTGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTATCAAAGGCTACTGGAACCGCTGTTGAGTGGGTCCAAATGCCCGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTCCCCTGGAGTGGCTGCACGTGCGTGCGGCCTCGTGGGTCTTGAACCTGCAAGGGTTGCTGAAATCCTCAAAGATAGGCTCTCATGGTATCGTGATTGCCGAACTGTGGATGTTCTAAATGTTATGTCCACAGGAAATGGAGGAACCATTGAATTGCTTTACATGCAGTTGTATGCGCCAACAACTCTGGCACCAGGTCGCGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGCAGTCTTGTTGTGTGTGAAAGATCACTTAACAACACACAGAATGGTCCTAGTATGCCTCCAGTGCCACATTTTGTTAGAGCTGAAGTGTTGCCAAGCGGTTATCTGATTAGACCCTGTGAAGGAGGGGGATCCATAATTCATATTGTTGATCATATGCTTTTAGAGCCTTGGAGTGTGCCTGAAGTTTTGCGCCCACTTTATGAGTCGTCCATGCTGCTTGCTCAGAGAACAACTATGGCAGCTTTACGTCATTTAAGGCAGATTTCTCAAGAAGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGGCGGCCTGCAGCTCTACGTGCGCTTAGTCAAAGATTGAGCAAGGGATTCAATGAAGCTGTCAACGGGTTTACAGATGATGGATGGTCTATGTTAGATAGTGATGGAATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAGATGATGGGACTAAATCTTGGTTATAACAATGGATTTCCATCTGTCACCAGTTCTGTGCTATGTGCCAAAGCTTCCATGTTGTTACAGAATGTCCCTCCGGCTATTCTTCTTAGATTTTTGCGGGAACACAGATCAGAATGGGCAGATACAAGTATTGATGCTTATTCAGCTGCTGCCATTAAAGCTGGTCCGTGTAGCTTGCCAGGGGCCAGAACAGGAGCTTTTGGTGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGTTCATGGAAGTTATTAAGCTTGAAAACATGGGCTACTATAGAGATGATATGACAATGCCTGGTGATATTTTCCTCTTACAACTTTGTAGTGGAGTGGATGAGCATGCAGTTGGCACAAGTGCAGAGCTTATTTTTGCTCCAATTGATGCATCTTTCTCTGACGATGCACCCATTTTGCCTTCTGGTTTTCGCATCATACCTCTTGAATCTGGCACAGATGCTGCTAGCCCAAACCGTACACTCGATCTTGCTTCTGCACTCGAGGTTGGAACCACAGGAAACAAAGCAGGTGGTGACAATTCTGGTCATTCAGGGATCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGCCCATCTTCAAGATAATATCGCAGCTATGGCACGACAGTATGTGCGTAGCATTGTTGCATCTGTTCAGAGAGTTTCATTAGCACTCTCACCATCGCGATTTGGTTCTCAGAATGCTTTTCCTTTGCCACCTGGAACTCCTGAGGCACAAACGCTCACTCGATGGATCTGTAACAGCTACAGATTCTATTTAGGCGCAGAATTACTCAAGTGTGAAGGGAGCGAATCGATACTTAAATCCCTTTGGCATCACTCAGACGCAGTTCTGTGCTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAAACCACCCTGGTTGCACTTCAAGACATCACCCTAGAAAAGATATTCGATGACAACGGAAAGAAAACCCTGTGCTCTGAATTTCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGCGGTATTTGTTTATCCAGCATGGGGAGGCCAATAACTTATGAGAGAGCTGTAGCATGGAAAGTATTGAACGAAGAAGAATCTGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTAA 2508 0.4494 MMAVSSGCKDGSKIAMDNGKYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENTFFRQHTQNTTLATTDTSCESVVTSGQQHPQPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSPGVAARACGLVGLEPARVAEILKDRLSWYRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPSMPPVPHFVRAEVLPSGYLIRPCEGGGSIIHIVDHMLLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFTDDGWSMLDSDGIDDVTLLVNSSPSKMMGLNLGYNNGFPSVTSSVLCAKASMLLQNVPPAILLRFLREHRSEWADTSIDAYSAAAIKAGPCSLPGARTGAFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTMPGDIFLLQLCSGVDEHAVGTSAELIFAPIDASFSDDAPILPSGFRIIPLESGTDAASPNRTLDLASALEVGTTGNKAGGDNSGHSGITKSVMTIAFQFAFEAHLQDNIAAMARQYVRSIVASVQRVSLALSPSRFGSQNAFPLPPGTPEAQTLTRWICNSYRFYLGAELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPITYERAVAWKVLNEEESAHCICFMFINWSFV* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4096 835 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Mtr3g4096 835 Gene3D - 193 375 IPR023393 -
Mtr3g4096 835 SMART HOX_1 17 83 IPR001356 GO:0003677
Mtr3g4096 835 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Mtr3g4096 835 CDD START_ArGLABRA2_like 154 369 - -
Mtr3g4096 835 CDD homeodomain 20 80 IPR001356 GO:0003677
Mtr3g4096 835 PANTHER CLASS III HD-ZIP PROTEIN CNA1 5 835 - -
Mtr3g4096 835 SMART START_1 159 369 IPR002913 GO:0008289
Mtr3g4096 835 Coils Coil 85 109 - -
Mtr3g4096 835 Pfam START domain 160 368 IPR002913 GO:0008289
Mtr3g4096 835 ProSiteProfiles START domain profile. 150 378 IPR002913 GO:0008289
Mtr3g4096 835 Gene3D - 12 85 - -
Mtr3g4096 835 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 835 IPR044830 GO:0003700
Mtr3g4096 835 CDD bZIP 72 111 - -
Mtr3g4096 835 SUPERFAMILY Bet v1-like 159 370 - -
Mtr3g4096 835 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Mtr3g4096 835 Pfam MEKHLA domain 694 834 IPR013978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4096 Mtr-Chr3 54742777 54748254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4096 16 835 Homeobox Transcription Factor Family AT4G32880 80.193 0.0 1381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr3g4096 START 1.7e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4096 K09338 - gmx:100815727 1576.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4096 3 54742777 54748254 Mtr3g4096 3 54742777 54748254 ECH