Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4095 ATGCTTTTCTCTCTCACAACTCCAAACCACAAACTTTGTCACACTTTGTTTCTACAACTTCTTCCTATACTTTCTCACTTCATTATTTTTTTTGCTTCAACTTCCAAACCTAACAACAACAACAACTTAACACAACCCATGGAAGCTCAAGAGTTTTTCCAATCCGACAACAATTCGAACACAAACAATGTAAACACTGCTGCTTCCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATGAGGATGTTGCCATTGAGGACCCCACTTTCGAAGAATCTCCTCCTACCAACTCTAATGATTCTCCTCCTCTTGAAACCAACCCCACTTCCAATTTCTTCACCGACAATTCCTGCCAGAATTCTGCCGACGGCCCTTTCTCCGGCGAACTCTCCGTTCCGTATGATGATCTTGCGGAGCTAGAATGGGTGTCCAAATTTGCTGAGGAATCATTTTCAAGTGAGGACCTACATAAGCTACAGTTGATATCTGGTTTGAAGGCACCAAATAACGTAGCATCAAAACCCTATGAAGAATCCAACCCAACAGTACACTCTCAAGTGTCTGTCCCGGCGAAAGCCCGAAGTAAGCGATCTCGTGTGCCTCCGTGCAACTGGACTTCGCGCCTTCTAGTTCTCTCTCCAACCACGACCACCACCACCACCACCACCACATCTTCTCACTCTGACACCATGGCTCCACCAAAAAAGCCTTCTCCAAGAAAGAGAGACCCCAATGATGGAGGGGAGGGTCGCAAGTGCCTTCATTGCGCCACTGATAAAACTCCACAATGGCGCACTGGGCCATTAGGTCCAAAGACACTTTGCAATGCCTGTGGAGTCAGATACAAGTCGGGTCGACTCGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTTGTGTTGACCAAGCATTCCAACTCACATCGAAAGGTGCAAGAGCTCCGACGCCAGAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAGCATTATGTTTGAAGGACCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGACCCGATTTCACGCACCTCATCTAG 1095 0.4676 MLFSLTTPNHKLCHTLFLQLLPILSHFIIFFASTSKPNNNNNLTQPMEAQEFFQSDNNSNTNNVNTAASDHFIVEDLFDFSNEDVAIEDPTFEESPPTNSNDSPPLETNPTSNFFTDNSCQNSADGPFSGELSVPYDDLAELEWVSKFAEESFSSEDLHKLQLISGLKAPNNVASKPYEESNPTVHSQVSVPAKARSKRSRVPPCNWTSRLLVLSPTTTTTTTTTTSSHSDTMAPPKKPSPRKRDPNDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHSIMFEGPSNGDDYLIHQHVGPDFTHLI* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4095 364 MobiDBLite consensus disorder prediction 214 253 - -
Mtr3g4095 364 Gene3D - 250 330 IPR013088 GO:0006355|GO:0008270
Mtr3g4095 364 CDD ZnF_GATA 254 301 IPR000679 GO:0006355|GO:0043565
Mtr3g4095 364 MobiDBLite consensus disorder prediction 176 202 - -
Mtr3g4095 364 ProSitePatterns GATA-type zinc finger domain. 255 280 IPR000679 GO:0006355|GO:0043565
Mtr3g4095 364 MobiDBLite consensus disorder prediction 93 120 - -
Mtr3g4095 364 MobiDBLite consensus disorder prediction 90 120 - -
Mtr3g4095 364 MobiDBLite consensus disorder prediction 236 253 - -
Mtr3g4095 364 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 250 312 - -
Mtr3g4095 364 PANTHER GATA TRANSCRIPTION FACTOR 47 364 - -
Mtr3g4095 364 PANTHER GATA TRANSCRIPTION FACTOR 47 364 - -
Mtr3g4095 364 MobiDBLite consensus disorder prediction 214 234 - -
Mtr3g4095 364 SMART GATA_3 249 299 IPR000679 GO:0006355|GO:0043565
Mtr3g4095 364 Coils Coil 313 333 - -
Mtr3g4095 364 ProSiteProfiles GATA-type zinc finger domain profile. 249 285 IPR000679 GO:0006355|GO:0043565
Mtr3g4095 364 Pfam GATA zinc finger 255 288 IPR000679 GO:0006355|GO:0043565
Mtr3g4095 364 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4095 Mtr-Chr3 54720694 54723152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4095 48 364 C2C2-Gata Transcription Factor Family AT5G25830 49.422 9.28e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr3g4095 GATA 1.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4095 - - gmx:100776588 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4095 3 54720694 54723152 Mtr3g4095 3 54720694 54723152 ECH