LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g4095	ATGCTTTTCTCTCTCACAACTCCAAACCACAAACTTTGTCACACTTTGTTTCTACAACTTCTTCCTATACTTTCTCACTTCATTATTTTTTTTGCTTCAACTTCCAAACCTAACAACAACAACAACTTAACACAACCCATGGAAGCTCAAGAGTTTTTCCAATCCGACAACAATTCGAACACAAACAATGTAAACACTGCTGCTTCCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATGAGGATGTTGCCATTGAGGACCCCACTTTCGAAGAATCTCCTCCTACCAACTCTAATGATTCTCCTCCTCTTGAAACCAACCCCACTTCCAATTTCTTCACCGACAATTCCTGCCAGAATTCTGCCGACGGCCCTTTCTCCGGCGAACTCTCCGTTCCGTATGATGATCTTGCGGAGCTAGAATGGGTGTCCAAATTTGCTGAGGAATCATTTTCAAGTGAGGACCTACATAAGCTACAGTTGATATCTGGTTTGAAGGCACCAAATAACGTAGCATCAAAACCCTATGAAGAATCCAACCCAACAGTACACTCTCAAGTGTCTGTCCCGGCGAAAGCCCGAAGTAAGCGATCTCGTGTGCCTCCGTGCAACTGGACTTCGCGCCTTCTAGTTCTCTCTCCAACCACGACCACCACCACCACCACCACCACATCTTCTCACTCTGACACCATGGCTCCACCAAAAAAGCCTTCTCCAAGAAAGAGAGACCCCAATGATGGAGGGGAGGGTCGCAAGTGCCTTCATTGCGCCACTGATAAAACTCCACAATGGCGCACTGGGCCATTAGGTCCAAAGACACTTTGCAATGCCTGTGGAGTCAGATACAAGTCGGGTCGACTCGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTTGTGTTGACCAAGCATTCCAACTCACATCGAAAGGTGCAAGAGCTCCGACGCCAGAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAGCATTATGTTTGAAGGACCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGACCCGATTTCACGCACCTCATCTAG	1095	0.4676	MLFSLTTPNHKLCHTLFLQLLPILSHFIIFFASTSKPNNNNNLTQPMEAQEFFQSDNNSNTNNVNTAASDHFIVEDLFDFSNEDVAIEDPTFEESPPTNSNDSPPLETNPTSNFFTDNSCQNSADGPFSGELSVPYDDLAELEWVSKFAEESFSSEDLHKLQLISGLKAPNNVASKPYEESNPTVHSQVSVPAKARSKRSRVPPCNWTSRLLVLSPTTTTTTTTTTSSHSDTMAPPKKPSPRKRDPNDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHSIMFEGPSNGDDYLIHQHVGPDFTHLI*	365

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mtr3g4095	364	MobiDBLite	consensus disorder prediction	214	253	-	-
Mtr3g4095	364	Gene3D	-	250	330	IPR013088	GO:0006355\|GO:0008270
Mtr3g4095	364	CDD	ZnF_GATA	254	301	IPR000679	GO:0006355\|GO:0043565
Mtr3g4095	364	MobiDBLite	consensus disorder prediction	176	202	-	-
Mtr3g4095	364	ProSitePatterns	GATA-type zinc finger domain.	255	280	IPR000679	GO:0006355\|GO:0043565
Mtr3g4095	364	MobiDBLite	consensus disorder prediction	93	120	-	-
Mtr3g4095	364	MobiDBLite	consensus disorder prediction	90	120	-	-
Mtr3g4095	364	MobiDBLite	consensus disorder prediction	236	253	-	-
Mtr3g4095	364	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	250	312	-	-
Mtr3g4095	364	PANTHER	GATA TRANSCRIPTION FACTOR	47	364	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g4095	Mtr-Chr3	54720694	54723152	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr3g4095	48	364	C2C2-Gata Transcription Factor Family	AT5G25830	49.422	9.28e-89	269

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Mtr3g4095		GATA	1.9e-15	CL0167

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g4095	-		-	gmx:100776588	373.629

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g4095	3	54720694	54723152	Mtr3g4095	3	54720694	54723152	ECH

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