Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4086 ATGAATAGTACTATTGAACAACCTCATAATAACTCAGAAACTAAAAGTAGCTCAAATTCACCACCACCACCATCACCACAATCCCAACAAATAAAAGGCATAAGAGACACAAGCAAGCATCCGGTATATCGTGGTGTCCGAATGCGAAATTGGGGAAAATGGGTGTCCGAAATTCGTGAGCCTAAGAAAAAATCCCGAATATGGCTCGGCACATTTCCCACACCGGAAATGGCAGCTCGAGCACACGATGTAGCTGCTCTCAGTATAAAAGGAAGTGCCGCCATTCTCAACTTCCCTGAGTTAGCAAACTTGCTTCCTCGACCGGCTTCACTTGCTCCCCGAGATGTTCAAGCAGCAGCTAATAAAGCAGCTCACATGGAGTTTCCATCTTCAACAACTTCATATGAATTGAGTGAGATAATTGAGCTTCCTCGTTTGGGAAACGTTGGAGATTTTGGAAAGGAGTTTGTATTTATGGATTCCATTGATACTTCATGGATGTTTCAGCCTCCTTGCTTGCACACCATGGAAGATGTGATTTGGAGTGAAATTTATAATAACTAG 564 0.4291 MNSTIEQPHNNSETKSSSNSPPPPSPQSQQIKGIRDTSKHPVYRGVRMRNWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPELANLLPRPASLAPRDVQAAANKAAHMEFPSSTTSYELSEIIELPRLGNVGDFGKEFVFMDSIDTSWMFQPPCLHTMEDVIWSEIYNN* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4086 187 MobiDBLite consensus disorder prediction 1 40 - -
Mtr3g4086 187 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Mtr3g4086 187 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Mtr3g4086 187 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 12 133 - -
Mtr3g4086 187 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Mtr3g4086 187 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Mtr3g4086 187 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Mtr3g4086 187 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Mtr3g4086 187 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Mtr3g4086 187 CDD AP2 43 101 IPR001471 GO:0003700|GO:0006355
Mtr3g4086 187 MobiDBLite consensus disorder prediction 1 18 - -
Mtr3g4086 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4086 Mtr-Chr3 54619390 54620448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4086 11 178 AP2-EREBP Transcription Factor Family AT5G11590 55.224 7.94e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr3g4086 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4086 K09286 - gmx:100813069 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4086 3 54619390 54620448 Mtr3g4086 3 54619390 54620448 ECH
Mtr3g4086 3 54619390 54620448 Mtr1g0008 1 106767 107774 PCT