Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4080 ATGTTTAATACTAATAGCAACCATTTTCTGATAGTAATTATGGTTCTTTCACTAGTCTTAAACACTCAAGGGCAAGAAAATAGAGAAACACAGAACATGGCAGAGTTACCAAAAGGTGTTACTCCAAGTAAAGGTGTTGTAATAATAGTACTTTCCATAATGTTTTTCCTAACTTTTATCTTACTTGTATATGTCAAATTCTGTCGTGTTACTCCTATTCATCTTCTAAACCCAAACTCTCTTAATCTTCAAAACAATCTAGGACAAACTCGATCGAGGTCTATAAATTCTGGCGTTGAACAAAAAGTAATTGAAACACTTCCTTTCTTCAAATTCTCTTCTTTAAAAGGATCCAAACAAGGCTTAGAATGTACCGTTTGTTTATCGAAATTTGAAGACGAGGAGATTCTGAGATTGTTGCCGAAATGCAAGCATGCTTTTCATATGAATTGTATTGACAAGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGCAGGTATATGGTTGAAGAAAGTGACATCAGAAACTTCACCTTTTCATTCAGCTCAAGATTCTTAAGAGTCCCTTCAAATTTAAGTGAAGATCCAAATCTTGAAATCTTTATTCAGAGACAACCATCACAAAGAAAGAACAAAAAAGAAGAACAAGAACATGAACATGAACTTGTTCTTCTTGATCATGAAGAAGGTGGAAGCAGCAATGTTACAAAGTGGAAGCAAGAACAAACTTTGCATATGATTAATCATAAAATATTGATCTCTGATGTTGTTACAAGGAGTAGGTGGAGTGATCTTAATTCTTCAGATTTGTTATCATTGAATAGTGAAATGCTTCATGATATGTCAAGCACTAGATTCTCTCCTGAATTTCATGGAATTTCAAGTGTTCATTCTGATGAAGAAGAAAATTCGTTTACGGCATTGAATCCTGGTGAGAAGAGGAGTATGTCTGAGATAGCAAATGTTCCAAGGTTTGTCGAAATCAGTAGAAGTGGGGAGAATGGAAGTGATGAGAGGTTGTGGAGGATTTGGATGCCAATTGCAAGGAGAACAGTTCAATGGTTTGCAAGACAAGAAACAAACTCTGTTCAATTACAACAACAACATAAACATTTAGTTTCAAACGTTTGA 1131 0.3484 MFNTNSNHFLIVIMVLSLVLNTQGQENRETQNMAELPKGVTPSKGVVIIVLSIMFFLTFILLVYVKFCRVTPIHLLNPNSLNLQNNLGQTRSRSINSGVEQKVIETLPFFKFSSLKGSKQGLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRYMVEESDIRNFTFSFSSRFLRVPSNLSEDPNLEIFIQRQPSQRKNKKEEQEHEHELVLLDHEEGGSSNVTKWKQEQTLHMINHKILISDVVTRSRWSDLNSSDLLSLNSEMLHDMSSTRFSPEFHGISSVHSDEEENSFTALNPGEKRSMSEIANVPRFVEISRSGENGSDERLWRIWMPIARRTVQWFARQETNSVQLQQQHKHLVSNV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4080 376 SMART ring_2 124 165 IPR001841 -
Mtr3g4080 376 CDD RING-H2_EL5_like 123 166 - -
Mtr3g4080 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 295 370 - -
Mtr3g4080 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 288 - -
Mtr3g4080 376 Pfam Ring finger domain 123 166 IPR001841 -
Mtr3g4080 376 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Mtr3g4080 376 PANTHER RING-H2 FINGER PROTEIN ATL4J 17 288 - -
Mtr3g4080 376 PANTHER RING-H2 FINGER PROTEIN ATL4J 295 370 - -
Mtr3g4080 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 175 IPR013083 -
Mtr3g4080 376 SUPERFAMILY RING/U-box 105 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4080 Mtr-Chr3 54571415 54572876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4080 42 369 C3H Transcription Factor Family AT2G20030 40.223 8.41e-71 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4080 K10664 - gmx:100816668 395.971