Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g4079 ATGCATGCCATTGCCATGGATGTCTATGGCAAGAGAAGCCTCCTCACCTTAATGGACAAGGAAAAAACAGAACAACAAGAATCCCCCAACATTCATCTTCATGTCCAAATCCATTCTCACAGAGAAGCAAATGAACAAGACATTCAATTTAGTCCACCAAGACCTTCTACCACATTTCCACAATCACCATGGACACTTTCCTCTCTTCCACCTCCTTCCCCTTCATTACTCTACCATTGCATCGCCTCCCTCCACCGCCACGAAGGAAACATATACTCCATCGCAGTTTCCAAGGGTTTCATCTTTACAGGCTCCAACAGTAGCCGAATTCGTGTTTGGAAGCAGCCAGATTGCATGGACAAAGGGTATCTCAAATCAAACTCTGGCGAAATCCGCACCATTTTAGCTTATAACAACATGGTTTTCTCCTCACACAAAGATCACAAAATCAGAATATGGAACTTCAACGTTTCAGAAAACTTCAAATCCAAGAAAGTAGCTACACTTCCTAAAAGAAGCAAAAACTCTTTTCTAAACTTCAGCAGAACAAAAAACAACAACTCACACAATCACAAACACAAAGATTTAGTTTCTTGCATGGCTTATTACCATTCAGAAGGACTCTTATACACTGGCTCACACGACAGAACAGTCAAAGCTTGGAGAATCTCTGACAGAAATTGTGTTGACTCATTTCTTGCACATGAAGATCATGTAAACGCTATCTTAGTAAACCAAGACGATGGTTGTGTTTTCACATGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGGGTCTACACAGAAAACTCACACACATTAACAATGACACTAAAGTTTCAACATTCACCAGTTAACACACTTGCATTGAGTTCTTCATTCAACCATTGTTTCCTCTATTCAGGAAGTTCAGATGGAATGATAAATTTTTGGGAGAAGGAAAGATTATGTTATAGGTTTAACCATGGAGGTTTTTTGCAGGGTCACCGTTTTGCGGTACTTTGTGTTGAAACGGTAGGGAACATGGTGTTTAGTGGATCAGAAGATACAACAATAAGAGTGTGGAGAAGAGAGGAAGATAGTTGTTATCATGAGTGTTTGATGGTTTTGGATGGACATAGAGGACCTGTTAGATGTTTGGCTGCTTGTCTTGAGATGGAGAAAGTTGTTGTAGGATTTTTGGTTTATAGTGCAAGTTTGGACCAAACATTTAAGGTTTGGAGGATTAAGGTTTTTTCGGAGGATGAGAATGTGTGTTTAGATGGTGATAATAATAAGTGTGATGGGAGAGTGAAGAAGATTAGGGAGTATGATATGAGTCCTGTTTTGTCACCTTCTTGGGTTGAGAAGAAACTTCAGGGTAGTAACGTAGGAGGAAACAAAGAAACAGACAAAGGTAGAAGCGTATCATTCATTTGCATAACAATGATCTCATCCTTAATGCTACCATCTGCTACAACATTAAGACCTTGTTGTAGTTGTAGCATCACTCCATCATCATCATCATCATCTTCACGAAGAATTGCTCTCTTTCATCTTCTCACCACTGGTGGTATTGCTCTACCACAATCCCAATTACTTGGTGGAAAAGGATCAGATTTGTTCCAAATAGCAGAGGCTAATGCTGCAGTAAATCTAGCCCAACCAGACCAAAACTTGTTTAACTGGGTCCAAAATGATAATAGAAGATTTCTACATGTTGTATACAAGGTTGGAGATTTGGACAAGACTATAAAATTCTACACTGAATGCCTTGGCATGAAGCTGTTAAGAAAACGTGATATACCAGAAGACAAATATTCAAATGCTTTTCTTGGATATGGGCCTGAAGATTCCAGTTTTACGGTTGAACTTACTTATAATTATGGAGTGGATAACTATGACATTGGAACTGGTTTTGGTCATTTCGGTATTATAGCTGAAGATGTTTCCAAGACAGTAGATATTGTAAAGGCGAAAGGGGGAAAGGTTACAAGAGAACCAGGGTCTGTCAAAGGTGGCTCTATAGTAACTGCTTCCGTTGAAGATCCTAGTGGTTATAGGTTTGAGCTTTTGGAGAGAAGACCTACCCGTGAACCCTTATGCAAAGTGATGCTTCGAGTAGGCGACCTTGATCGTGTCATAGCCTTCTATGAAAAAGCTGTTGGCATGAAACTTCTCCACAAGATAGACAACCCTGAGGAAAAGTACACAGTAGCCAAGTTGGGATATGGTCCTGAAGCTAATGGTCCTGTTTTACAACTGACGTATAACTACGGCGTCACTAATTATGACAAAGGAAATGGCTATGCACAGATTGCTATAGGCACGGACGATGTCTATAAGACTGCAGAAGCAATCAAATCATGTGGAGGGAAGATTATCCGCGAACCTGGACCCTTACCTGGTATCAACACCAAGATCGTTGTTTGCTTGGACCCTGATGGTTGGAAATTGGTATTTGTTGATAATGTTGATTTTCTGAAGGAACTAGAGTGA 2478 0.4011 MHAIAMDVYGKRSLLTLMDKEKTEQQESPNIHLHVQIHSHREANEQDIQFSPPRPSTTFPQSPWTLSSLPPPSPSLLYHCIASLHRHEGNIYSIAVSKGFIFTGSNSSRIRVWKQPDCMDKGYLKSNSGEIRTILAYNNMVFSSHKDHKIRIWNFNVSENFKSKKVATLPKRSKNSFLNFSRTKNNNSHNHKHKDLVSCMAYYHSEGLLYTGSHDRTVKAWRISDRNCVDSFLAHEDHVNAILVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQHSPVNTLALSSSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCVETVGNMVFSGSEDTTIRVWRREEDSCYHECLMVLDGHRGPVRCLAACLEMEKVVVGFLVYSASLDQTFKVWRIKVFSEDENVCLDGDNNKCDGRVKKIREYDMSPVLSPSWVEKKLQGSNVGGNKETDKGRSVSFICITMISSLMLPSATTLRPCCSCSITPSSSSSSSRRIALFHLLTTGGIALPQSQLLGGKGSDLFQIAEANAAVNLAQPDQNLFNWVQNDNRRFLHVVYKVGDLDKTIKFYTECLGMKLLRKRDIPEDKYSNAFLGYGPEDSSFTVELTYNYGVDNYDIGTGFGHFGIIAEDVSKTVDIVKAKGGKVTREPGSVKGGSIVTASVEDPSGYRFELLERRPTREPLCKVMLRVGDLDRVIAFYEKAVGMKLLHKIDNPEEKYTVAKLGYGPEANGPVLQLTYNYGVTNYDKGNGYAQIAIGTDDVYKTAEAIKSCGGKIIREPGPLPGINTKIVVCLDPDGWKLVFVDNVDFLKELE* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g4079 825 Pfam WD domain, G-beta repeat 227 263 IPR001680 GO:0005515
Mtr3g4079 825 Pfam WD domain, G-beta repeat 365 407 IPR001680 GO:0005515
Mtr3g4079 825 Pfam WD domain, G-beta repeat 277 311 IPR001680 GO:0005515
Mtr3g4079 825 Pfam WD domain, G-beta repeat 191 221 IPR001680 GO:0005515
Mtr3g4079 825 Pfam WD domain, G-beta repeat 325 355 IPR001680 GO:0005515
Mtr3g4079 825 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 695 817 IPR029068 -
Mtr3g4079 825 Gene3D - 184 323 IPR015943 GO:0005515
Mtr3g4079 825 SUPERFAMILY WD40 repeat-like 79 410 IPR036322 GO:0005515
Mtr3g4079 825 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 563 687 IPR037523 -
Mtr3g4079 825 SMART WD40_4 117 154 IPR001680 GO:0005515
Mtr3g4079 825 SMART WD40_4 319 356 IPR001680 GO:0005515
Mtr3g4079 825 SMART WD40_4 271 312 IPR001680 GO:0005515
Mtr3g4079 825 SMART WD40_4 184 222 IPR001680 GO:0005515
Mtr3g4079 825 SMART WD40_4 363 408 IPR001680 GO:0005515
Mtr3g4079 825 SMART WD40_4 225 264 IPR001680 GO:0005515
Mtr3g4079 825 SMART WD40_4 77 114 IPR001680 GO:0005515
Mtr3g4079 825 CDD GlxI_Ni 565 685 - -
Mtr3g4079 825 ProSitePatterns Glyoxalase I signature 1. 566 587 IPR018146 GO:0004462|GO:0046872
Mtr3g4079 825 TIGRFAM glyox_I: lactoylglutathione lyase 552 695 IPR004361 GO:0004462|GO:0046872
Mtr3g4079 825 TIGRFAM glyox_I: lactoylglutathione lyase 694 818 IPR004361 GO:0004462|GO:0046872
Mtr3g4079 825 Gene3D - 324 537 IPR015943 GO:0005515
Mtr3g4079 825 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 263 - -
Mtr3g4079 825 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 693 817 IPR037523 -
Mtr3g4079 825 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 6 452 IPR045182 -
Mtr3g4079 825 Gene3D - 690 825 IPR029068 -
Mtr3g4079 825 Gene3D - 538 689 IPR029068 -
Mtr3g4079 825 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 231 IPR001680 GO:0005515
Mtr3g4079 825 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 224 - -
Mtr3g4079 825 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 697 813 IPR004360 -
Mtr3g4079 825 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 564 684 IPR004360 -
Mtr3g4079 825 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 263 IPR001680 GO:0005515
Mtr3g4079 825 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 114 IPR001680 GO:0005515
Mtr3g4079 825 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 562 689 IPR029068 -
Mtr3g4079 825 Gene3D - 64 183 IPR015943 GO:0005515
Mtr3g4079 825 PANTHER OS01G0232200 PROTEIN 6 452 - -
Mtr3g4079 825 CDD WD40 80 408 - -
Mtr3g4079 825 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 365 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g4079 Mtr-Chr3 54564861 54569287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g4079 694 816 Calmodulin-binding Proteins AT1G08110 25.676 7.28e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g4079 - - mtr:MTR_3g110185 1636.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g4079 3 54564861 54569287 Mtr3g4079 3 54564861 54569287 ECH